Zingiber officinale (ginger): 122001612
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Entry
122001612 CDS
T08725
Name
(RefSeq) DNA topoisomerase 2-like isoform X1
KO
K03164
DNA topoisomerase II [EC:
5.6.2.2
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zof03032
]
122001612
03036 Chromosome and associated proteins [BR:
zof03036
]
122001612
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
122001612
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Topoisomerases
122001612
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Chromosome condensation proteins
Other regulators of chromosome condensation
122001612
Centrosome formation proteins
Centriole proteins
122001612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
TOPRIM_C
DNA_gyraseB
Toprim
HATPase_c
VAPB_antitox
Motif
Other DBs
NCBI-GeneID:
122001612
NCBI-ProteinID:
XP_042412378
LinkDB
All DBs
Position
7A:79599455..79605673
Genome browser
AA seq
1441 aa
AA seq
DB search
MAAAMKIPLQSSTAHNAALGAAAAVGKKTIEQIYQKKTQLEHILLRPDTYIGSVEKHTQS
LWVFENGEMVYRPVTYVPGLYKIFDEILVNAADNKQRDPSMDAVKVVIDVEANLISIYNN
GDGVPIEIHHEEKVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLANIFSTQFVIET
ADGRRLKKYKQVFNDNMSEKSEPSITKCKEGENWTKVTFRPDLAKFNMAHLEEDVVALMK
KRVVDVAGTLGKSVKVELNGQRVPVKSFSDYVNLYLKSASKNKSEPLPRIAEKVNDRWEI
CVSLSEGQFQQVSFVNGIATIKGGTHVEYVTTQITNHIISIVNKKNKNANLKAHNVKSHL
WVFVNALIDNPAFDSQTKETLTTRQGSLGSKCELSQDFLKKVAKSGVVNTLLTWADFKQS
KELKKTDGAKRQRITGIPKLEDANDAGGRNSDKCTLILTEGDSAKALAMSGISVVGRNYY
GVFPLRGKLLNVREANHKQIMDNAEIQNIKQILGLQHGKEYDSAKGLRYGHLMIMTDQDH
DGSHIKGLLINFIHTFWPSLLKVPSFMVEFITPLLKATNNRTKTVLSFYSMPEFEAWKES
LGGNSNGWSIKYYKGLGTSKSEEGKEYFRNIGMHKKEFVWMDAQDGESIELAFSKKKIEA
RKNWLRQFEPENYLDQSETLIKYSDFINKELILFSRADLQRSIPSMVDGLKPGQRKILFC
AFKRNFVKQAKVAQFIGYVSENSAYHHGEQSLATTIIAMAQDFVGSNNINLLQPEGQFGT
RHQGGKDHASARYIFTCLAPITRFLFPKDDDILLDYLNEDGQSIEPSWYMPIIPLVLVNG
SEGIGTGWSSYIPNYNPKDIVANVKRLLNNEPMQPMDPWYRGFKGRIEKSATKEGGLTYT
ITGLIEEIDSTTLRVTELPVRRWTQDYKEFLESSMTGNDKIKEPFIKDYREHNDDKTVHF
EVSVTEENMNIARQEGLEKKFKLTTTISTTNMHLFDSKSVIKKYDSPEQILEEFFALRFV
YYEKRKKALLNNLELDLLKLDNKARFILGVVRDEIVVNKRKRADLFLELQQKGFTPFPKK
TKGIDAAVAGASEEDGEQEESPQPGKGGALASDYDYLMSMRIDSLTEEKVQELCAQKEKL
EAEVDELRRTSPQTLWLRELDALEEELDKLDQKEAEAEGARKEMRMNHIAGVAPSKQGAK
KPRKNTANKLSVSATTTDAGGQKKSKKAPAKKQQTVEESDEDEEILALKDRLAAYNLDSS
PDNGAMETDTVVSDQGKAKKQPSRNAAAKKATYALSSDEDDEPEQQQLLMPTIEEVDDVV
EEASVKAVKGRKPKNETAKATRKRGPAQASKATTTSQKVRKMRASPFNKKSGSVLSKPRN
EDSSSSSSSNDATAAAARTRPKRESRTKAAVYVESDSEGETNEVEDDDDDATEDSDFQDE
D
NT seq
4326 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgccatgaagattcccctccagtcgagcaccgctcacaacgccgccctggga
gccgctgccgctgtaggaaagaagaccatcgagcagatctaccagaagaagacgcagctg
gagcacatcctcctccgccctgacacctacattggatccgtcgagaagcacacccagagc
ctctgggtcttcgagaatggcgagatggtctaccgtcccgtcacctacgtccccggcctc
tacaagatcttcgacgagatcctcgtcaacgccgctgacaacaagcagcgcgacccctcc
atggacgccgtgaaggtcgtgatcgacgtcgaggccaacctaatcagcatctacaacaac
ggagatggtgtgccaatcgagatccatcatgaggagaaggtctacgtgccggagttgatt
ttcggccaccttcttaccagcagcaactacgacgacaacgtcaagaagactaccggcggg
cgaaacgggtacggtgccaagctcgccaacatattctccacccagtttgtcatcgagacc
gctgacgggcggaggctgaagaagtacaagcaggtgtttaacgataacatgagtgagaaa
tctgagccctcaattacgaagtgcaaggaaggggaaaactggactaaggtcacttttagg
ccagatttggccaaattcaacatggcgcaccttgaagaagatgtggttgctctcatgaag
aagagagtagttgatgtagctggaactctcggtaaatctgtcaaggtggagttgaatgga
caacgagtacccgtgaaaagtttctccgattatgtcaacctgtaccttaagtccgcatca
aaaaataaatctgaaccacttccaaggattgcagagaaggtaaatgacagatgggaaatt
tgcgtcagtctaagtgaagggcaattccagcaggtcagctttgtaaatggtatagccaca
atcaaaggtggaactcacgttgagtatgtcactactcaaatcacaaatcacataatcagc
atagtgaacaagaaaaacaagaatgctaaccttaaagcacataatgtgaaaagtcatttg
tgggttttcgtcaatgcactcattgacaaccctgccttcgattctcaaaccaaagaaacc
ttgaccactcgacaaggaagccttgggtcgaaatgtgagctttcacaggatttccttaaa
aaagttgctaagtccggagttgtaaacacgctgctcacatgggctgattttaagcaaagc
aaagaattgaagaagacagacggtgccaagaggcagcgaattacaggcatccctaagctt
gaggatgctaatgatgctggaggaaggaactcagacaagtgcacactgatattgactgaa
ggagattcagccaaggctcttgctatgtctggcatctcggtggtaggcaggaactattat
ggtgtgtttccactaagggggaaactgctgaatgtcagagaagcgaaccacaagcaaatc
atggacaatgctgaaatccagaacataaagcaaattcttggtttgcagcacggaaaggag
tatgatagcgctaaagggttgagatatggccatctaatgataatgacagatcaggatcat
gatggttcccacatcaagggactgctcattaactttatccatacattttggccttcattg
ctaaaagtgccctcttttatggttgaattcataactccacttttgaaggctactaataat
agaaccaaaactgtcctctcattctattccatgcccgaatttgaagcgtggaaagaaagt
ctgggaggaaattcaaatggttggtcaatcaagtactataaggggttaggcacgagtaaa
tcagaagaaggaaaagagtactttagaaacataggcatgcataaaaaggaattcgtatgg
atggatgcgcaggatggtgaatcgattgagttagcatttagtaagaaaaagattgaggct
agaaaaaattggcttcgccaatttgagcctgagaattatctcgatcaatcagaaacgctc
attaaatacagtgatttcatcaacaaggaactgattctattctccagagctgatctacaa
agatcaataccttcaatggttgacggcttgaaaccaggccaaaggaaaattttgttctgt
gcattcaagagaaattttgtcaagcaagccaaggttgcccagttcattggctatgtctcc
gagaactccgcctatcatcatggcgaacagagccttgctactaccataattgccatggcc
caagattttgtggggagtaacaacataaatcttttgcaacctgaagggcaatttggcacc
agacaccagggcggcaaagaccatgcaagtgcaagatacattttcacttgcttggctccc
atcactaggtttttgttcccaaaggatgatgatattcttctggactacttaaatgaggat
gggcaatcaatcgaaccctcttggtacatgccaatcatccctttggttctggtcaacgga
agcgaagggattggaactggatggagttcttacattcctaactacaatccaaaagacatt
gttgccaatgttaagcgattgttgaacaatgaaccaatgcagcctatggacccctggtac
cgaggatttaagggtcgtatagagaaatccgcaacgaaggaaggtggtttgacctacaca
ataaccggtctcatagaggaaattgatagcacaacactcagggtaacggagttgcccgtt
cgtagatggacccaggattacaaggaatttctcgaatcttcgatgactgggaacgacaag
atcaaggaacccttcatcaaggactaccgggaacacaatgacgacaaaacagtacacttc
gaggtttctgtgactgaggaaaatatgaacattgcgcggcaagaagggcttgagaaaaag
tttaagctgacaactaccattagcaccaccaacatgcacctgttcgattcaaaatccgtc
attaagaaatatgatagtcccgagcagattcttgaggagttctttgcactgagattcgta
tattatgagaagagaaagaaagcgctgctgaacaatcttgagttggatctgctgaagttg
gataacaaagcgaggttcatcctgggcgtagttcgagacgagatagtagtcaacaagcga
aagagagcagatttattcctcgagctgcagcagaagggcttcactcccttcccaaagaaa
acaaaaggcatcgacgctgctgttgcgggagccagcgaagaagatggagaacaagaagaa
agcccacagccaggaaagggcggggccctagccagtgactatgactatctgatgtctatg
agaatcgattcattgactgaagaaaaagtgcaagagctttgtgcgcaaaaagaaaaacta
gaagccgaggtagatgagttaagaagaacatctcctcaaactctatggttgagggaactc
gatgcattagaagaggaactcgataaactcgatcagaaggaggctgaggcagagggagcg
aggaaggaaatgagaatgaatcacatcgccggggttgcaccttctaaacaaggagctaag
aagccaagaaaaaataccgcaaacaaattatctgttagtgctaccactactgatgcagga
ggtcagaagaaatccaagaaagctcccgctaaaaagcagcaaacggttgaagaaagtgac
gaagatgaagaaatacttgcgctgaaagaccgacttgctgcctacaatcttgattcttcc
cctgataatggagccatggaaactgacacagtggtatcagaccaaggaaaggcaaagaaa
cagcccagcagaaatgctgctgcaaagaaggcaacttacgccctctcgtctgatgaggac
gatgaacctgagcagcaacaactcctcatgccgacaatcgaggaagtcgacgacgtcgtc
gaggaggcatcagtgaaagcagttaaagggcgaaagcctaagaatgaaactgccaaggcc
accaggaagagaggtcccgctcaggccagcaaggcgactactactagtcagaaggtcagg
aaaatgagggcctctcctttcaacaagaaaagtggatccgtgttgagtaaaccaaggaat
gaagactcgagcagcagctcctcgtccaacgacgcgacagcggcagcagcaaggactcgg
ccgaagagagaaagcagaaccaaagctgctgtgtacgtggagagtgattcggaaggggaa
accaacgaggtggaagatgatgatgatgatgcgactgaggattctgacttccaggatgaa
gattaa
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