Zingiber officinale (ginger): 122001738
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Entry
122001738 CDS
T08725
Name
(RefSeq) plant-specific TFIIB-related protein 1-like
KO
K03124
transcription initiation factor TFIIB
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122001738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122001738
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
122001738
Prokaryotic type
Archaeal type
TFB
122001738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Cyclin_C
HTH_Mga
Motif
Other DBs
NCBI-GeneID:
122001738
NCBI-ProteinID:
XP_042412562
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All DBs
Position
7A:complement(88731047..88735329)
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AA seq
545 aa
AA seq
DB search
MGRVRCPYCQGTAGRSATTPYGRCVTECCSCGRVVEERQVYTHQLFPLRAFDYPLPLVTP
DLPLPPPSAAVEATNEDDEDPFHPTGFVTTFSTLSLEPCPLFARSATSFAGHLAELERAL
DSSSSSSSSSSVSDGSGGPLVSVDHLRAYLQILEVSSILRLEHDIADHAFQLFRDCSSTT
CLRNRSIEALATAALVHAIREAQEPRTLQEISSASNLPQKEIGKYIKILGEALKLSQPIN
SNSIAVHMPRFCTLLQLNKSAQQLAAHIGEVVVNKCFCTRRNPISISAAAIYLACQLEDK
RKTQAEICKVTGLTEVTLRKVYKELLENWDDLMPPNYTPAVPPEKAFPMTTITSGRSSAN
KDMVDAYHSSAHHDKDKHSEAIEASKISNSLEFSHTVKVNDEAEKKSSSHVRNLTSFDPQ
DLNHGSFSMPQVPFGMFQCKPQREDVKGEQGIINLNETEPNLSEHKKASKDLRMGDTSGW
VDQTSTPSSSKRYTSSWHLNPATAAPESYVQLANRQLGLQFVPGTGESAKGGNDDAASRG
HKPEN
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcgtgcgctgcccttactgccagggcaccgccggccggagcgccactacgccc
tacggccgctgcgtcaccgagtgctgttcctgcggacgagtggtggaggagcggcaggtt
tacacccaccagctcttccccctacgcgctttcgactaccccctgccccttgtcacccct
gaccttcccttgccgcccccttccgccgctgtcgaagccaccaacgaggatgatgaggac
cccttccacccaaccggattcgtgaccacgttctccaccctatccctcgagccctgccct
ctcttcgcccgctctgctacctctttcgccgggcaccttgcggagctggagcgtgcccta
gattcttcctcttcttcgtcttcttcttcttccgtctctgatgggtcgggagggccgctc
gtctccgtagaccacctccgggcgtacctccagatcttggaggtatcgtccatccttagg
ctagagcatgacatagctgaccacgccttccagctcttccgtgactgctcttctaccact
tgcctccgaaaccgtagcatcgaggctctggcgacggctgcgcttgtgcatgccatccgt
gaggcacaggaacctcggaccttacaggaaatatcttctgctagcaatcttcctcaaaag
gagatcggaaagtacatcaagatcctaggggaggctctgaaacttagccaacccatcaac
agcaattctattgcagtccacatgcctaggttttgtacacttctccaactaaataaatca
gctcagcaacttgcagctcatattggagaagttgttgtgaacaaatgcttttgtactcgt
cggaacccaataagcatctcagctgctgctatctacttagcatgtcaactagaagataaa
cgtaaaactcaggctgagatttgtaaggtgactggtttaacagaggttacccttcggaag
gtgtacaaagagcttttggagaattgggatgatttgatgcctcctaattacactcctgca
gtgccccctgagaaagctttcccaatgactacaatcacctctggtcgatcttcagccaac
aaagatatggttgatgcttaccattcgagtgcacatcacgacaaagataaacactcagaa
gctattgaagcaagtaaaatttctaattctctcgagtttagtcatacagtcaaagtgaat
gacgaggcagagaagaaaagcagttcccatgtccgcaatcttacatctttcgatccccag
gatttgaatcacggatcattctccatgccacaggttccatttggcatgttccagtgcaaa
ccgcagagagaggacgtaaagggtgaacaaggcatcatcaatcttaatgaaactgaaccc
aatctgtcagagcataagaaggccagcaaggacttgaggatgggtgatacttctggatgg
gtggatcaaacttcaactccctcatcgtcaaaaagatacacaagttcatggcatttgaat
cctgcaacggctgccccagaatcgtacgttcagttggcaaatcgacagttgggtcttcaa
tttgttcctggaactggcgagagtgcaaaaggtggaaatgatgatgctgcgagtaggggc
cacaagccagagaattaa
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