Zingiber officinale (ginger): 122001880
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Entry
122001880 CDS
T08725
Name
(RefSeq) cell division cycle protein 48 homolog isoform X1
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122001880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122001880
03009 Ribosome biogenesis [BR:
zof03009
]
122001880
04131 Membrane trafficking [BR:
zof04131
]
122001880
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zof04147
]
122001880
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
122001880
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
122001880
Membrane trafficking [BR:
zof04131
]
SNARE
SNARE associated proteins
Others
122001880
Autophagy
Aggrephagy
Other aggrephagy associated proteins
122001880
Exosome [BR:
zof04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
122001880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_22
AAA_5
AAA_33
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
AAA_28
Mg_chelatase
ATPase_2
Parvo_NS1
AAA_18
IstB_IS21
ABC_tran
Viral_helicase1
AAA_7
NACHT
Vps4_C
NB-ARC
AAA_24
TsaE
DUF815
Zeta_toxin
Zot
Motif
Other DBs
NCBI-GeneID:
122001880
NCBI-ProteinID:
XP_042412790
LinkDB
All DBs
Position
7A:complement(99027037..99034239)
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AA seq
809 aa
AA seq
DB search
MANQGEGSSSDPSKGKKDYSTAILEKKKAPNRLVVDEATNDDNSVVALHPETMEKLQLFR
GDTILLKGKKRRDTICIALADETCDEPKIRMNKVVRSNLRVRLGDVVSVHQCQDVKYGKR
VHILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEY
CIVAPDTEIFCEGEPIKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIG
VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAE
KNAPSIIFIDEIDSIAPKRDKTGGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID
PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAAL
CTEAALQCIREKMDIIDLEDESIDAEILNSMSVTNEHFKTALGTSNPSALRETVVEVPNV
SWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE
CQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAG
GAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRY
QIFKACVRKSPVSKDVDLAVLAKYTQGFSGADITEICQRACKYAIRENIEKDIEREKKKS
ENPEAMEEDEVEAAAEIKAVHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF
SERSEPASGNTASDPFTAGAADDDDDLYS
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcaaggcgagggttcctcttccgatcccagcaagggaaagaaggattacagc
acggcgattctcgagaagaagaaggcacctaaccggctggtcgtcgatgaggctactaac
gatgataattctgtggttgccttgcaccctgaaacaatggagaagcttcagctctttcgt
ggagataccatactgttgaagggtaagaaaaggagggatactatctgtattgctctcgct
gatgagacatgtgatgagccaaaaatccggatgaacaaagttgtcagatcaaaccttagg
gtgaggcttggggatgttgtctcagttcatcaatgccaagatgtcaagtatgggaagcgt
gttcatatactgccaattgatgacacaattgaaggagtgacggggaacctgtttgatgca
tatttgaaaccatactttctggaggcatatcgtcctgttaggaaaggagatctcttcctt
gtcaggggagggatgagaagtgttgagtttaaggttatagagactgatcctgcggaatac
tgtattgttgcgcctgacacagagattttctgtgagggggaacctataaagagggaggat
gaagacagacttgatgaggtgggttatgatgatgttggaggagttagaaaacaaatggct
caaataagagagttagttgagctacctcttaggcaccctcaattgtttaagtcaattggt
gtcaagccaccaaaaggcatattattgtatggaccacctggttctggaaagacattgata
gctagagcagttgcaaatgaaactggagctttctttttctgcattaatggccctgagatc
atgtcaaaacttgctggtgaaagtgagagcaatctgagaaaggcttttgaagaagcagag
aaaaatgcgccatcaattatttttattgatgagattgattcaattgctcccaagagagac
aaaactggtggggaagttgagaggcgtatagtttctcaacttttgacactaatggacggt
ttgaaatctcgtgctcatgtgattgtcattggggctacaaacaggccaaatagcattgat
ccagctctcagaagatttggaaggtttgacagggaaattgatattggtgtcccagatgaa
gttggacggttggaggttcttcggattcacaccaagaatatgaagctagctgaagatgtt
gatttagaaaggatttctaaggatactcacggttatgttggagctgaccttgcagcactc
tgcactgaagctgctctacaatgcattcgtgaaaagatggacataattgacttggaggat
gaatctattgatgctgagattctcaattctatgtctgttacaaatgaacatttcaagact
gctcttggaacaagcaatccatctgctttacgtgagactgttgttgaagtgcctaatgtc
agctgggatgatattggtggtttggagaatgtcaagagggagctgcaagagactgtgcag
tacccagttgagcatcctgagaagtttgagaagtttgggatgtccccatccaagggtgtt
ttgttttatgggccacctggttgtggaaaaactttgttagctaaggccattgctaatgag
tgccaggcaaattttatcagtgtcaagggtcctgaattactgaccatgtggttcggtgag
agtgaagcaaatgtacgtgaaatctttgacaaagcacgtcaatctgcaccttgtgttctc
ttttttgatgagcttgactccattgcaactcagagaggcagtagtgtcggtgatgctgga
ggtgctgctgatagggttctcaaccagctactgacagaaatggatggcatgaatgccaag
aaaactgtcttcattataggagcaactaacagacctgatataatagaccctgcattgctt
agaccaggtcgtttggaccaattgatttatattcctttgccagatgaggcttcaagatac
caaatatttaaggcttgtgtaaggaaatctcctgtgtcaaaagatgttgacctagctgtt
cttgccaagtacactcagggatttagtggcgccgatatcacggaaatttgccaacgtgca
tgcaagtatgctattagagagaacattgagaaggacattgaaagggagaagaagaagagt
gagaatcctgaagcaatggaagaagatgaggttgaagcagcagcagagatcaaagctgtc
cattttgaggaatctatgaagtttgcacgacgcagcgttagtgatgcagacattcggaag
taccaagcttttgctcagactttgcagcaatcaagggggtttggctcagagttccgcttc
tcagaacgatctgaaccggcatctggtaacacagcatcagaccctttcacagcaggtgct
gctgatgacgacgacgatctatatagttaa
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