Zingiber officinale (ginger): 122001922
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Entry
122001922 CDS
T08725
Name
(RefSeq) probable RNA-dependent RNA polymerase 5 isoform X1
KO
K11699
RNA-dependent RNA polymerase [EC:
2.7.7.48
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
zof03036
]
122001922
Enzymes [BR:
zof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.48 RNA-directed RNA polymerase
122001922
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Gene silencing
RNA interference (RNAi) pathway
RDRC (RNA-directed RNA polymerase complex)
122001922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RdRP
SnoaL_3
Motif
Other DBs
NCBI-GeneID:
122001922
NCBI-ProteinID:
XP_042412847
LinkDB
All DBs
Position
7A:102349237..102469028
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AA seq
999 aa
AA seq
DB search
MKPQPSPTIVGRSMAHDNALDNAVWLPRSVEELLHRICVEQSLLQPDPGARRALADLGEA
AALDVLMQMSGRRIRNFSGFILYMANNFRPIPTQESFADTLPSGSSSPLRSCGVCSEESL
QSDPRYVAPSSSGQSISPQLIALGQLEFRKAFLVLSYLGRYKLEETISVEFIKQIQWLNM
DQFESVVWEELRSKCIPLLDRRKSSDWDSSKAHIYHCHVDLEGHLIFKGPYLQLQRTHMQ
RVLGDDNVLLVKFAEEMNIGKGSHAFQGYESIYHKVAQEGILVGLRRYQFFVYKDGGKEK
KKSSISSPVKCYFVRMESNWIADQEKPYILSDKFIHESRAVFMHVHTVSSLSKYMARFSL
ILSKTMKLDIDLASVHVEMIDDIVCVDDDGNISYDENGEPLIHTDGTGFISEDIALKCPH
HIFKGKCSTPMSNQFLDGSEIAEEPLNITKSLTSEAPLLIQFRLFNKGAAFKGTLLLNKL
LPPRTIQVRPSMRKVKSDASFSYIQSCNSLEIVATSNRPKRTCLSRYLIALLHYGGVPNE
YFLELLKNALDDAQNARYTKLAAIRVSLKYGDMDDFLVSRMILCGIPLEEPYMQFRLSVL
MKEERKGLKAGKLPVTDCYYLMGTVDPTGLLKPNEVCVVLENGQISGDVLVYKHPGLHFG
DIHVLSARYIKELELFVGDSKYAIFFPIKGSRSLADEMANSDFDGDMYWVSRNSQLLRYF
RSSKPWVPMSSTAGVQQKGPLDLTDRELEKKLFDQFLANRFKPSYTISVAADCWLSYMDR
LLTLSDDCVEEKECLKEKILKLVDIYYDAVDAPKSGLKVDVPPELKADKYPHYMEKLKSD
SYTSTSILGLIFNKAGSVQTEDNQFNGISKLSCFSRYSESGLSLWKPRYTNYLSEMAQAL
EHEIEEFKEEMADDIIKKYKWMLYEAAEFEDSPRKRDDIFEEALAIYNLAYDYAQMGGVG
RCSFAWNVAGRALCMLHASKQDDKSLIPCSRSVLTEILG
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccccagccatcgcctaccatcgtcggtcgatccatggctcacgacaatgcccta
gacaacgcagtctggctgcctaggtctgttgaagagttgctccaccggatttgtgttgag
cagtcgctgctccagccggaccctggggccaggagggccctggccgacctgggggaagca
gccgccttagacgtcctgatgcagatgtcaggaagaagaataagaaatttttctggtttc
atcttgtacatggcgaataacttccgcccgatacccacccaggagagtttcgctgacact
ctgccctcgggctcctcctctcctttgcgcagctgtggcgtgtgctccgaagaatcactt
cagagcgatcctcgatacgtggctccgtcatcatctgggcagtcaataagtcctcagctc
atagcactgggccagcttgaattcaggaaggcttttttggttctaagttatttaggaagg
tacaagttagaagaaactatatcagttgaatttatcaagcaaattcaatggttgaacatg
gatcagtttgagtcagttgtttgggaggaattgaggtctaaatgcattccgctgcttgat
aggagaaagagctcggactgggattccagtaaggctcatatataccattgtcatgttgat
ttagagggacatttaatctttaagggtccttacttgcaacttcaaagaactcatatgcag
agagtgttgggtgatgataatgtcttgttagtaaaatttgctgaggaaatgaatattgga
aaaggatctcatgctttccagggatatgagtcaatataccacaaggttgctcaagaggga
attcttgtgggattacgacgctatcagttttttgtttacaaagatggtggcaaggagaag
aaaaaaagctccattagttcccccgtgaaatgttattttgttcgcatggaatcaaattgg
atagctgatcaggaaaaaccttatatactatcagacaagttcatacatgagtccagagct
gtttttatgcatgtacatacagtttcaagtttgtcaaaatatatggccagattttctttg
atcttgtccaaaacgatgaagttagatattgatcttgcgtcagttcatgttgaaatgatt
gacgacatagtatgcgtggatgatgatgggaacatctcctatgatgaaaatggtgagcca
ctgatccacactgatggaactgggtttatttcagaagatatagctttgaaatgtccccat
catatctttaaggggaaatgctcgacaccaatgagtaaccagttcttggatggatctgaa
attgcagaggaacctctcaacattacaaagtcgcttacttcagaagcgcctctgcttatc
cagttccgtttgtttaacaaaggagcagcatttaagggaaccctactattgaataaactg
cttcctccgagaactatacaagtaagaccttctatgaggaaagttaaatcagatgcaagt
ttttcttatattcagtcttgcaactccttggagattgttgcaacaagcaatcgaccaaag
cggacatgcttatcaagatacttgattgcactgcttcactatggaggagtacccaacgag
tactttttggaacttctgaaaaatgctttagatgatgctcaaaatgctaggtacaccaaa
ctagctgcaatcagagtttcactcaagtatggggatatggatgattttctggtgtcacga
atgatactttgtgggattccacttgaggagccatatatgcaatttcgtctttctgttcta
atgaaagaagaaaggaagggtctgaaagcaggaaagcttccagtgacagattgttattat
ctaatgggaactgtagacccaactggtttgctgaaacctaatgaagtttgtgttgttctt
gaaaatggacaaatttctggagatgtccttgtttataagcatccgggtttgcattttggt
gacatacatgttctttcagcaaggtacattaaggaacttgagttgtttgtgggagattct
aaatatgctattttcttccctattaaaggctcacggtctttagctgatgagatggcaaac
agtgacttcgatggtgatatgtactgggtctctagaaattcacagttactgagatatttt
agaagtagcaagccgtgggttccaatgtctagcacagcaggtgttcaacaaaaaggacca
cttgatcttactgatagagaattggaaaagaaactttttgatcaatttttagccaacagg
ttcaagcccagttacaccattagtgtagctgcagattgttggctttcatatatggatagg
ctgctgactctaagcgatgattgtgtggaggagaaagaatgtctaaaagagaagattctt
aagttagttgacatatattatgatgcagtggatgcaccaaaaagtggactgaaggttgat
gttccccctgaactcaaggctgataagtatccacattacatggagaagttgaagtcagat
tcttatacttcaacatccatactgggattgatctttaataaagcgggttcagtgcaaact
gaagataatcaatttaatggaatatcaaagctatcttgtttcagtcgttactccgaatct
ggcctatcattgtggaagccaaggtacacgaattatttgagtgaaatggcacaggcattg
gaacacgaaatcgaagaattcaaagaggaaatggcagatgacatcatcaagaaatataag
tggatgttatatgaagctgccgagtttgaagacagcccaaggaaacgtgatgatatattt
gaggaggctcttgctatttataatctagcatatgattatgcacaaatgggaggcgttggt
aggtgcagttttgcttggaatgttgctggacgagcactatgcatgcttcacgcatcaaaa
caagatgataaatccttgattccttgctcaagaagtgtacttacagaaattcttgggtaa
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