KEGG   Zingiber officinale (ginger): 122002424
Entry
122002424         CDS       T08725                                 
Name
(RefSeq) DNA repair endonuclease UVH1-like isoform X1
  KO
K10848  DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03420  Nucleotide excision repair
zof03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    122002424
   03460 Fanconi anemia pathway
    122002424
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:zof03032]
    122002424
   03400 DNA repair and recombination proteins [BR:zof03400]
    122002424
DNA replication proteins [BR:zof03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    122002424
DNA repair and recombination proteins [BR:zof03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     122002424
SSDB
Motif
Pfam: ERCC4 ASFV_J13L
Other DBs
NCBI-GeneID: 122002424
NCBI-ProteinID: XP_042413519
LinkDB
Position
7A:complement(126539258..126546129)
AA seq 989 aa
MLPFQEQIISDLLDDRNGGLVVVASGFPFSSLIASLLLLHHPSAGSFLLLSASEPQKSAI
SAALRRAAPVHTDPLPFPSDLPSDLPSHHRTALYASGAALFVTPRILVADLLTSRVPPSS
VATLVVLNAHRLSDTSTEAFIARILHSYSPSTPIVAFTDCPHAMVSGFSKAERIMKSLFV
RRLHLWPRFHVLVSSDLERTPPEVVDVRVPMSAAMKGIQDAILGSMDACLRELRRTNKVD
VEDLTVENGLFKSFDEIVRRQLDPIWHTLGKKTKQLVSDLKTLRKLLDYLVRYDAVLYLK
YLDTLRVSEGVQSMWIFADSSYKIFELAKRRVYQVVRADGTKSSLDDKSTPSKKRRVNDK
RKKESEGDDADGRKVDANVGIMLEEVLEEAPKWKVLRELLEEIEAERREENQSEEGQTKV
EDAGDLSDIVLVACKDEHSCLQLEDCILKGPHQVMRDEWEKYLLGKVELHNLRKRNKKKS
QEPKGFGLLDGIVTAGSSDNTDPSSISKFENDALLAAASELRIPANKESVLEENNQSDGR
RKGYKKTRGKKTRSKGKPMTGNPGFNFKIDQINTNENISSGNNGALGQPATGSMQNDQES
SLENVCIDRSDIQTHAAESVPAASRQTKLLPPVQFYALDSDQQILNALKPSVIIVYHPNM
TFVREIEFYQAENPSKKLKVYFLFYEDSAEVQKFEASIRRENSAFESLIRQKSLMMIPVD
QNGRCIGASTPSETESIILQNSLTRKAGGRMSQGRKMQVIVDMREFMSSLPNVLHLKGMH
VIPVTLEVGDYVLSPMICVERKSIADLFQSFASGRLYHQVETMIRYYKMPVLLIEFSQDK
SFSFQSTNDIGDDVSPTNIISKLSLLVLHFPRLRLVWSRNVHATAEIFASLKQNQDEPDE
SKAIRVGVPSEDGVVDNDVRAENYNTSAIEFLRRLPGVTDTNYRALMDGCKNLAELALLP
VERLAELMGGQKAARTLKEFLDAKCPTLS
NT seq 2970 nt   +upstreamnt  +downstreamnt
atgctccctttccaggagcagattatctccgacctactcgacgaccgcaacggcggcctc
gtcgttgtcgcctctggcttccccttctcctccctcatcgcctccctgctcctcctccac
cacccctctgccggctccttcctcctcctctcggcctcagaacctcagaagtccgccatc
tctgctgccctccgccgcgctgcccctgtccacaccgacccccttccctttccttccgac
ctaccctctgatctcccctcccatcaccgcactgccctctacgcctccggcgccgccctc
ttcgtcacacctcgcattctcgtcgccgacctcctcacctctcgcgttcccccctcctcc
gtcgctaccctcgtcgtccttaacgcacatcgcctctctgatacctccactgaggccttc
atcgctcgcatccttcactcctactcgccctctacccctatcgtcgccttcaccgattgc
cctcatgccatggtctccgggttctccaaggccgagcggattatgaagtccctcttcgtc
cgccgcctccacctctggccgaggttccacgtcctcgtctcctccgacctcgagcgaacg
ccacctgaggtcgtcgacgtcagggtacccatgtccgctgccatgaagggaatccaagat
gcgattcttgggtccatggatgcctgccttagggagctgaggaggaccaacaaggttgat
gtcgaagacctcacggttgagaatgggctcttcaagtcttttgacgagattgtgaggcgg
cagttagacccgatctggcacactcttgggaagaagaccaagcagctggttagtgatctc
aagaccctgaggaaactgctggattaccttgtcaggtatgatgcggtcttatacttgaaa
tatttagataccctgagagtttcagaaggtgttcaatcgatgtggatttttgctgattca
agctataagattttcgagctcgcaaagaggcgagtttaccaagtagttcgagcagatggt
acaaaaagcagcctagatgataaaagcacccctagcaagaaaagaagggttaatgacaaa
agaaaaaaagaatcagaaggcgatgatgcagatggaaggaaagtggatgctaatgttggc
ataatgctggaagaagtcctggaagaagctcctaagtggaaggtgttgcgtgagcttctt
gaggaaatagaagctgagcgaagagaggaaaatcagtcagaggaaggacaaacaaaagtt
gaagatgcaggggacctgagtgatattgttttggtggcctgtaaagatgagcactcatgc
ttgcaattggaggattgcatcttaaaaggaccacatcaggttatgcgagacgaatgggag
aaatatctgctaggtaaagttgaattacacaatctaagaaaacggaataagaaaaaatct
caggaacctaaaggctttggtttacttgatggtattgtcactgctggatcatctgataac
acagaccctagcagcatatccaaatttgaaaatgatgctctgttagctgcagcctctgag
cttagaattccagctaataaagaatctgttcttgaggagaataatcaatcagatggtaga
aggaagggctacaaaaaaacaagagggaaaaaaacaagaagcaaaggcaagccaatgact
ggaaatcccggtttcaattttaagatagatcagattaatacaaatgaaaatattagttca
gggaataatggtgcactaggtcaacctgcaacaggatccatgcagaatgatcaagaaagt
tctctagagaatgtttgtatagatagaagtgatattcaaacacatgctgcagaatcagtt
cctgcagcatcccgtcaaaccaaattacttccacctgtgcaattctatgctctggacagt
gatcaacagatacttaatgcactgaagccatctgtaattattgtatatcatccaaacatg
acctttgttagggaaatagaattttatcaagcagagaatccttcaaaaaaattaaaggtt
tactttttattctatgaagactcagctgaggtgcaaaaatttgaggcaagcatacggagg
gaaaatagtgcatttgaatctttgatccggcaaaaatcactgatgatgatcccagtggat
cagaatgggcgttgtattggagctagtactcccagcgaaacagagtcaattattttacag
aattcattaacaagaaaggcaggtggtagaatgtcacaaggcagaaaaatgcaggttatt
gttgatatgagggagttcatgagcagtcttcctaacgttcttcatttgaaaggcatgcat
gtcatacctgttactctggaagttggtgactatgttctttcccccatgatttgtgttgaa
aggaaaagcattgcagacttgtttcaaagttttgcatcaggtcgtctctatcatcaggtg
gaaacaatgattcgttactacaaaatgcctgtcctcctaatagaattttcacaggacaaa
agcttctccttccagtccacaaatgatatcggtgatgatgtctcaccaacaaacataatt
tcaaagctttcgttgcttgttcttcattttcctcgcttgcgcctggtttggtcccgcaat
gtgcatgccacagcagaaatatttgcatcactcaaacaaaatcaggatgaaccagatgag
agcaaggcaatcagagtaggtgttccatcagaagatggtgtggtggataatgatgtaagg
gctgaaaactataatacgtctgcgatcgagttcttgaggcgtctccctggagtgacagac
acaaattacagagcattgatggatggatgtaaaaacttggccgaacttgctctgctacct
gttgaaaggttggcagaactcatgggtggtcagaaagcagctcggacgttgaaggaattt
ctcgatgccaagtgcccaaccttgtcatga

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