Zingiber officinale (ginger): 122002441
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Entry
122002441 CDS
T08725
Name
(RefSeq) autophagy-related protein 18b-like isoform X1
KO
K17908
autophagy-related protein 18
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
122002441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
122002441
03029 Mitochondrial biogenesis [BR:
zof03029
]
122002441
Membrane trafficking [BR:
zof04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
122002441
Mitochondrial biogenesis [BR:
zof03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
122002441
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WDR55
Beta-prop_Vps41
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
BCAS3_WD40
Beta-prop_IFT140_1st
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
Motif
Other DBs
NCBI-GeneID:
122002441
NCBI-ProteinID:
XP_042413547
LinkDB
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Position
7A:complement(126997118..127002915)
Genome browser
AA seq
368 aa
AA seq
DB search
MKSSSVGSPSSSPIICASFNQDNSFFSVGTKDGFKIFDARSGRLCYERAVGAFNIVEMLF
STNLLAIVGAGEQPSLSPRRLCLFNFLTGSTLRELNYLTSVLAVRLNKKRLIVILQDKAY
IYDLNSLAVLETIDTVPNNKGLCAFCPGSEGCYLALPASTSKGSVLIYNTVELQSVCQID
AHRSPLAGITFSSTGTYLATASEQGTIIRVHLVSQATESYSVRRGTYPSTIYSLSFGPCL
EFPEFLVATSSSGSLHTFSLGQAIKQRRKPSGVIGSLIPDTLSDSFDQTFHHILHNAAPT
GVKSHVRIYNVDSLTCTSGASGFRASIFIISHNGYFREYTLKITELNEFSWSLEREINLL
DNILNEPF
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgaagagcagttccgtcggctccccttcttcctcgccgatcatctgcgcgtccttcaac
caagacaacagcttcttttcagttggaacaaaagatgggttcaaaatttttgatgccagg
tcaggtagattgtgctatgaaagagctgttggtgctttcaacattgttgagatgctattt
agtacaaatcttcttgctattgttggggcaggagagcagccatcactatcgcctcggcga
ctttgtcttttcaattttctgactggatctacactcagagagttaaattatttgacatca
gtcctagctgttcgtcttaacaaaaagaggcttattgtcatcttgcaggataaagcatat
atttatgacttgaacagcttggctgttttggagacaatagatacagtaccaaacaacaaa
ggactctgtgcattttgccctggttcagaaggttgttatttggctcttccggcaagtaca
agtaaaggatctgtcttgatttacaacacagttgagctccaatcagtctgccagatagat
gcacaccgttcaccattggctggaataacattctcctccactggtacatatttggcaaca
gcttctgaacaaggaactatcatcagagtgcacctcgtttcgcaagctactgagtcatat
agtgtccgcagaggaacatatccatcaacaatctattccctgtcatttgggccatgcctt
gaattccctgaatttctagttgctacaagctcatctggctccctacatactttctccttg
gggcaggcaataaaacaaagaagaaaaccaagtggagtcattggttccttgatccctgac
acgttgtctgattcgtttgaccaaacttttcatcacattcttcacaatgctgcccctacc
ggtgtcaaaagccatgttaggatctacaatgttgacagtcttacatgtacctcaggagct
tctggttttcgggcatctattttcatcatttctcacaatggttacttcagagaatacaca
ttaaagatcactgagttgaacgagttctcatggagcttagaacgtgaaatcaatctctta
gacaatattttgaacgagccattctaa
DBGET
integrated database retrieval system
