Zingiber officinale (ginger): 122002970
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Entry
122002970 CDS
T08725
Name
(RefSeq) RAN GTPase-activating protein 1-like
KO
K14319
Ran GTPase-activating protein 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122002970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122002970
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
122002970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WPP
LRR_6
LRR_4
LRR_8
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
122002970
NCBI-ProteinID:
XP_042414313
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All DBs
Position
7A:141256825..141260598
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AA seq
541 aa
AA seq
DB search
METAQEFQRTFSIKLWPPSANTRAMLVDKMTKNLSSETFLSRKYGLLSKEEAYENAKRIE
DECFLAANEHFHNEPDGDGSSAVQFYAKQTSKLMLEVLKTGPRSKEDVEATAVGGIAKPV
ETLFDISGGKRAFIEVEEVRELFRPLTVQGNSYSKICLSNRSFSIDAARVAAPILTSLKE
QLTEVNLSDFVAGRPEDEALEVMKIFSSALEGTALRYLNLSDNALGEKGVRAFGALLKSQ
NCLEELYLMNDGISEEAAKAVCELIPSTDKLTTLHFHNNMTGDEGAIAISELLKCSPLLE
DFRCSSTRVGSEGGIELAKALETCTHLRKIDLRDNIFGVDAGIALSKALEKLVHVTEIYL
SYLNLEDEGSIAIVNALNNFAPSLQVLDLGGNDITLKAASALVDCITAKESLRKLFLSEN
ELKDQGAIVIGKALEDDHVQLEELDMSSNMIRRAGARCLAQAVSTKPDFKRLNINGNFIP
DEGIDEVREILKNGKNSEDVLGPLDDNDPEGEDEGEEDGDAEEEDQGELESKLHHLKVDK
D
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccgctcaagagtttcaacgcacattctccattaaattatggcctcccagtgca
aacaccagagcaatgcttgtggacaagatgacaaagaacctctcctcggaaacattcctc
tccaggaagtacggtctgttgagcaaagaagaggcctatgagaatgccaaacgcattgaa
gacgaatgcttccttgctgcaaatgagcattttcacaatgagcctgacggcgatggaagc
tctgcagttcagttctacgcgaagcaaactagcaagctaatgttagaagttcttaaaaca
ggccctagatccaaagaagatgtagaagccactgcggttggtgggatcgcaaaacctgtt
gagactctgtttgacatatccggtgggaaaagggcatttatagaggtggaagaggtcagg
gagcttttcaggccgctaactgtgcagggaaactcatacagcaaaatttgcttaagcaat
agaagcttcagtatcgatgcagctcgcgttgcagcgcctattctgacatctcttaaagag
cagctgacagaagtaaacctgtcagattttgttgccggaagaccagaggatgaagctctc
gaagtcatgaagatattctcctcggctctggaaggcactgctctccgatatctcaacctc
tctgacaatgccttaggcgagaagggtgttcgagcattcggggcacttttaaaatcacaa
aactgcttggaggagctttacttgatgaatgatggaatctccgaggaagctgcaaaggct
gtgtgtgagttaattccttcaaccgacaagcttacaacgctccatttccacaacaatatg
actggtgatgagggtgcgatagctatttctgaacttcttaaatgttctccgttgttggag
gatttcagatgctcatcgacaagggtgggctctgagggtggaatcgagttggccaaggca
ttggagacttgcactcatttaaggaagattgatctccgtgataatatttttggtgttgac
gcagggatagcccttagcaaggcactcgaaaagcttgttcatgtcacagaaatctacctt
agctatctcaacttggaggacgaagggtctattgccattgtgaatgcgctgaataatttc
gcgccttctttgcaagtcttggacctcggcgggaatgatatcactttaaaagctgcctca
gcattagtcgattgcatcactgccaaggaatcactcaggaaactcttcttgtccgagaac
gaactgaaggaccagggtgcaattgtcatcggcaaagcattggaagatgatcatgttcaa
cttgaggaacttgacatgagtagcaacatgataaggagggcaggggctagatgcttggcg
caagcagtgtcaactaagccagacttcaagcggctgaacataaacggaaattttatccca
gatgagggcatcgacgaggttagggaaatattaaagaacggtaaaaactctgaggatgtg
cttgggccattggatgataatgatcccgaaggtgaggacgaaggggaagaggatggcgat
gcggaagaggaggatcaaggcgaattggagtctaaactccatcatctcaaagtagacaag
gattag
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