Zingiber officinale (ginger): 122003045
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Entry
122003045 CDS
T08725
Name
(RefSeq) THO complex subunit 4B-like
KO
K12881
THO complex subunit 4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
zof03015
mRNA surveillance pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122003045
09122 Translation
03013 Nucleocytoplasmic transport
122003045
03015 mRNA surveillance pathway
122003045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122003045
03041 Spliceosome [BR:
zof03041
]
122003045
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122003045
TREX complex
122003045
Spliceosome [BR:
zof03041
]
Complex C
Other components
EJC/TREX
122003045
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122003045
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
YHR127W_C
RRM_10
Kdo_hydroxy
Motif
Other DBs
NCBI-GeneID:
122003045
NCBI-ProteinID:
XP_042414411
LinkDB
All DBs
Position
7A:142185832..142188642
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AA seq
239 aa
AA seq
DB search
MSGALDMSLDDIIKSSKKTAGGGRGRGREGGGPSRRAPNRTANRSAPYSAGKAPDSVWQH
GMYSTAQAGGFPAPTARASSIETGTKLYISNLEFGVSNEDIKELFSEVGDLKRYSINYDR
SGRSKGSAEVVFARRTDAIAAVKRYNNVLLDGKPMKIEIIGTNISTPAVVPQATDGAFGK
PNGTSKSTGPARVSPGWPRAGGRGRGRSRGRGKGRSEPVSAEALDADLDKYHTEAMQTN
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcgccctcgacatgtccctcgacgacataatcaaatccagcaagaagactgcc
ggcggaggacgcgggcggggccgtgagggcggcgggccgtcccgtcgcgcgcccaaccga
acggctaaccgatccgccccttactccgccgggaaggctcccgactcggtgtggcagcac
ggcatgtactcgacggcgcaggcgggcggttttcctgctccgacggcgagggcttcctcc
atagagactggcaccaagctgtatatctcgaatttggaattcggagtgtcgaacgaggac
atcaaggaactgttttcagaggttggggatctcaagcgttattctataaattacgataga
agcggaaggtctaagggatcggctgaagtggtctttgcaaggagaactgatgctatagca
gctgtgaagaggtacaataatgtcctactcgatggaaaacccatgaaaatagaaattatc
ggcacaaatatttcaacaccagctgttgtacctcaagctacagatggtgcctttggaaag
cctaatggcacttcaaaaagcacgggaccagcaagagtttctccaggatggccacgagct
ggtggccgtggaagagggcggagccgtggtagaggtaaaggacgtagtgaacctgtttct
gctgaagcacttgatgcagatttggacaagtatcatacagaagcgatgcaaaccaactga
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integrated database retrieval system