Zingiber officinale (ginger): 122004383
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Entry
122004383 CDS
T08725
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122004383
03036 Chromosome and associated proteins [BR:
zof03036
]
122004383
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
122004383
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
122004383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
SPT6_acidic
Spt6_S1
HHH_9
Tex_central_region
HTH_44
SH2
Tex_N
Motif
Other DBs
NCBI-GeneID:
122004383
NCBI-ProteinID:
XP_042415212
LinkDB
All DBs
Position
7B:63349365..63366744
Genome browser
AA seq
2444 aa
AA seq
DB search
MGGVAVESEEEDEFEASEEMDGENVGYSGDELDDEDEEASQDEYEQDGFIVDEVEEEEEL
EDSDTERHRRSNKKKKRESDKGFVLDEDDYVLLEDNNITGFRRPQVTNKFKRLKKTGRSI
ELEGKYGLSNEESIDRSNQDGFSAEERLKHSLFGFDEVMLSDDIAEEEEHSEDRSAIGDE
DEMADFIVDEDVDEVGDLATKKRLTKKKSHKLPGISSSALQEAKEIFGDVDELLMLRKQG
LVSSVDDGSCVEKRLEDEFEPFVLSEKYMTLKDVAIREKDVPERIQLFEDITGPPPTDDK
KIEEESHWIYDMLTHGSISPLVGYDALQYIHKKEIENVLTMIHLQKLDIPFISMYRKELC
GSLLKDLEDNMQDREEIQHIKWHKILWAIWTLDNKWLLLQKRLIALRSYYCRRFIEETQR
VDDEARHSFNKIIFQSVISALNNAKFEREVDDIDAKFNLHFPPSEEDTYGGKFKRPKRKS
TYTILRKAGLWEIANKFGANSETFGMLLSLEKISDEVEDTKESPEEMAANYICSMFQTHK
DVLRGARHMASVDIAYEPNIKKHVRGIFMETAVVSTSPTHQGNQQIDAYHLLGGVKWLRN
KPLSKFVDGQWLLIQKGEEDKLLKVTIKLPDDVLNKLLSDAFDCYLSEGVSRSAKSWNDQ
REMILKDSFFTYIFPSMEKEARSLLTTRAKYWLRMEYGRQLWNKISIAPFQWNDSNSEDE
HAVRVMACCWGSGKSPTTIVMLDSEGEMVDVLYVNSFSVKSQTVADQQSKKNDQLQVLKF
MMNHQPHVVCVGAANMACKKLSDDIYEVIFKIVEDHPTEVGRELENIRTVFGDETLPCLY
ENSRVSLDQFPGQPGIVKRAVALGRYMQNPLAMVATLCGPGKEILSWKLHSLDHFLTPDE
KYEVVEQIMVDATNQIGLDINLAASHEWLFAPLQFISGLGPRKSSSLQKAFLRAGFISNR
KEISMGKMLKKRVFTNAVGFLRVRRSGAAAATSHIMDLLDDTRIHPESYELAKNVAKDIY
DEDDPNEANFTDDDMLEMVIEHVRENPQMLKVLDINEYAKSIFNRYGTNNKETLSDIKME
LLKGFRDYRTPFKEPSDKEKFAMLSGETNDTISEGRIVEVRVCHVNENQITCAFDSGVKG
IVSSHDYSDEGYDLTKVHKGDILTCKIQRINTNRHVVYLTSKASDLRNGTYNLHNRDPYY
VEGVVSGIRKTEVSKSNRLAMNHFTPRMIVHPCFQNLSADEATKYLSDKKPGESIIRPSS
KGLSFLTLMLKIFDGVYAHKQIIESKKDRTDMTSLLRLGKTLTIDKDTFEDLDEIMDRFV
NPLVTHLRRMLGYRKFRKGTRKEVDDLLRAEKIANPMQIVYCFGVSHQHPGTFILSYIRN
ANPHHECIGLIPKGFRFRNKDFDDINRLVLHFQKNINKPPLGQCPSSRTFAAVVPLKSYT
WAASDGSGYTGDKFDSRNTNSLDGHRNGRGHDCQTYTNDDANNSGGDKVQNSAGRESSGW
NNRGTGGDQGVYNSGGAWQGGSCTKAGFSSASTGNNGDWSEYGTGNGRAVENSSIPAGWA
VDSSVGWGSGGTEGKWGSGEVAPGGGESTLDGSQRSWHGRGNSTGDKFDSRNTNSLDGHR
NGRVHDCQTHTNDDANNSGGDKVQNSAGRESSGWNNRGTGGDQGVYNSGGAWQGGSCTKA
GFSSASTGNNGDWSEYGTGNGRAVENSSIPAGWAVDSSVGWGSGGTEGKWGSGEVAPGGG
ESTLDGSQRSWHGRGNSTGNWRGGNDDSPGCSSRGRGRGRGRGRGRGRNSNDSAQGNDSA
YSGWSIAGGTSWSNNGGRIGRGGWNERGRGGRGRSWRGGNAGGRSGRGSSGCGGGDGGTN
TGGWLERGSGFAASSCEKSTGANGSNDGWGGWGGVTNGNARPGWGGNNGGGAEKSGWGDW
GSGSGQGGKEEGGKVVGGGDWGATSVNGGGGWGGKTGGSHIEASRWGGNTAGGNADSGGG
CGGGDGGTNTGGWLERGSGFAASSCEKSTRASGSNDGWGGWGGVTNDNAGPGWGGNNGGG
AEKSGWGDWGSGSSQGGKEEGGKVVGGGDWGATSVNGGGGWGGKTGGSHVGGGWGGKIGG
SHVEASRWGGNTARGNADSGGGWGGIRTSEVGRGWGGKTSGGTAGSSGSWGSGKSSEVGK
KGSYAGAGDSGCEAGGGWGNKTIVENAGFSGGWNDGKTTDISSKDGWVGGGGSQGKADGT
WGSKTSRDNAGSGCWSGGKTNDNDSKDGWGRSGASRGKVGGGWGGKTCGDNTGAEGGSKT
TRDNAGSGCFGGHKTNNNDNKDGWGKSGASRGKDGGGWGGKICGDNTGAEGDCGGKTNSN
DSNYGWGRSGASSGKVGGWNGKTCGDNAGVDGGCGGSKTSRTDSGCWGGGKTNNDSKDGW
GRSGPSRGKDGGGWGGKTCGDNAGSDGGKTSDSSSKGGGGGGWI
NT seq
7335 nt
NT seq
+upstream
nt +downstream
nt
atgggtggcgtggcggtggaatcggaggaagaagatgagtttgaagcttccgaggagatg
gatggggagaacgttggctatagtggtgacgagttggatgacgaagatgaagaagcgagc
caggacgagtacgagcaagatggatttatcgtggacgaggtagaagaagaggaagagctg
gaggatagtgacacggagaggcacagaaggagtaataagaaaaagaaaagggaatcggat
aagggttttgttcttgacgaggatgattacgtgttgctcgaggacaacaatattactggc
ttccgtcgaccacaagttactaacaaatttaagcgcttgaagaagactggaaggagcatt
gagttggaggggaaatatgggttatcgaatgaagagtcaattgataggagtaatcaggat
ggattctcagctgaagaaagacttaagcacagcttgtttggatttgatgaagtgatgctg
tcagatgatattgctgaggaagaagagcactcggaagataggagtgctattggagatgaa
gatgaaatggcagattttattgtggatgaagatgtcgatgaagttggtgaccttgcaaca
aagaaaaggttgacaaagaagaaatcacacaaattgccaggcatttcatcatctgctttg
caagaagcaaaagagatatttggtgacgttgatgagcttcttatgctacggaagcaaggc
cttgtgtcaagtgtcgatgatggcagttgtgtagaaaaaagattggaagatgagtttgaa
ccctttgttctttcagagaaatacatgacactaaaggatgtggctatacgagagaaagat
gtacctgagagaattcagttatttgaggatattactggtccacctccaacggatgataag
aaaatagaagaggagagtcactggatttatgatatgcttactcatggcagtatctcacct
ttagttggctatgatgcactccaatatatacataagaaggagattgaaaatgtcttgaca
atgatacatttgcaaaagcttgatattcctttcattagcatgtatcgcaaggaattatgt
ggtagtcttttgaaggatcttgaagataatatgcaggatagagaagaaattcaacacatc
aaatggcataagatactttgggcaatttggacgttagataacaagtggttgttgcttcag
aagaggttgattgcacttcgttcatactattgtcggcgttttatagaggaaacccaaaga
gttgatgatgaagcaagacattcttttaataaaataatttttcaatcagtgatttcggca
ttgaataatgcaaaatttgaaagagaggttgatgacatagacgcgaagttcaacttgcat
tttcctcccagtgaagaagatacatatggtgggaaatttaagagaccaaagagaaaatca
acatataccattttgcgtaaagctgggttatgggagattgcaaacaagtttggtgctaat
tctgaaacatttgggatgcttctctctttggaaaagatatctgatgaagttgaagatact
aaagaatctcctgaagaaatggctgcaaattatatatgttcaatgtttcaaacccataaa
gacgtgcttagaggggccagacatatggcatctgtggatattgcctatgagcctaatatt
aaaaaacatgtgcgtggtatcttcatggagacggctgttgtatcaaccagtcctactcat
caaggaaatcaacaaattgatgcctatcatctgcttggaggtgtaaaatggctaagaaat
aagcctttatcaaagtttgtggatggtcagtggctgcttattcagaagggtgaagaagac
aagttgcttaaagtcacaattaaattacctgatgatgtcctaaataaattattaagtgat
gcttttgattgttatctgagtgaaggtgtcagtagatctgcaaagtcatggaatgaccag
cgggaaatgatattgaaagattcatttttcacttatattttcccatcaatggaaaaggaa
gctcgttcattattgacaactagagccaagtattggcttcgtatggaatatgggaggcaa
ttgtggaacaagatctctattgcccctttccagtggaacgacagtaattcagaggatgag
catgcagtgagagtaatggcttgttgttggggatctggaaaatctccaactaccattgtc
atgttggattcagaaggagaaatggtggatgtgctttatgttaattcctttagcgttaaa
tcccaaactgttgctgatcaacagagcaagaagaatgaccagctccaggttctcaagttc
atgatgaatcaccagccacatgttgtttgtgtaggagcggcaaatatggcctgcaagaaa
ttgtcagatgatatttatgaagtgattttcaagatagtcgaggatcatccaactgaagtt
ggtcgagagttggaaaacatcaggacggtctttggtgatgaaactttaccttgcctttac
gagaactcaagggtttcgctagatcaatttccagggcaaccaggtattgtgaaacgtgct
gtggcacttggtcgttatatgcaaaaccctttggctatggtggcaactctttgtggacct
ggaaaagaaattctgtcatggaaacttcattccttggatcattttcttacaccagatgag
aagtatgaggttgttgagcagattatggttgatgctactaatcaaattggcctggatatc
aacctagcagcaagtcatgaatggctttttgctcctctacagtttatttctggccttggg
cctcgaaaatcatcttctttgcaaaaagcattcttgagggctggatttatttctaatcgc
aaggagatttctatgggtaaaatgcttaaaaagagagttttcactaatgctgttggattt
ttacgtgtacgacgaagtggtgcagcggctgccactagccatattatggaccttttggat
gacacaagaattcatccagagtcgtatgaactcgcaaagaatgttgccaaggatatctat
gatgaggatgatccaaatgaagcaaattttactgatgatgatatgttggagatggtgatc
gaacatgttagagaaaacccgcaaatgcttaaagtgcttgatatcaatgagtatgcaaag
agcatttttaatagatatgggaccaacaacaaggagacactttctgatataaagatggag
cttttgaagggatttcgggactaccggacaccttttaaagaacctagtgacaaagagaag
tttgctatgctctcaggcgaaacaaatgataccatttcagaagggagaattgttgaagtc
agagtgtgccatgtaaatgagaatcaaatcacatgtgcatttgattctggtgtaaaagga
atagtgtcctcgcatgactactcggatgaaggatatgatcttacgaaggtgcataaaggt
gacatacttacgtgcaagattcagcgcatcaatacaaatagacatgtggtttatctgaca
tccaaagccagtgacctgagaaatggtacatataatcttcataatcgcgatccttattac
gttgagggtgtggtcagtgggattagaaaaacagaggtctcaaagagcaacagacttgca
atgaatcatttcacaccgaggatgattgttcatccctgtttccaaaatctgtcagctgat
gaggccacaaagtacctctctgacaaaaaacctggtgagagtattatacgtcccagttcc
aaagggctatcttttttgacattgatgctaaaaatctttgatggagtttatgctcacaaa
caaatcatagagagtaaaaaagatcgcacagatatgacaagcttactccgtctcggaaag
acacttacaattgataaagacacttttgaagatcttgatgagatcatggaccgatttgtc
aatccattggtgacccatttgagaagaatgcttggttatcgtaagttcagaaaaggaact
aggaaagaggttgatgatctgctaagagcagagaagatagcaaatccaatgcagatagtg
tactgttttggggtttctcatcagcatcctgggacttttattctatcatatattaggaat
gcaaatccacatcatgagtgtattgggctaattcctaaaggattcaggtttaggaataag
gattttgacgacatcaaccggcttgtgcttcattttcagaagaatataaacaaaccacca
cttggtcaatgcccatcttcacgaacatttgctgcagttgtaccattgaaaagttataca
tgggcagcttcagacggcagcggatatacaggtgacaaatttgactccagaaatactaac
agtctagatggtcatcgtaatggtagaggacatgattgccaaacttatacaaatgacgac
gcaaacaattctggtggtgacaaagttcagaactcagctggaagagaatcttccggttgg
aataatagaggcacgggtggcgatcagggcgtgtataatagtggtggtgcttggcaaggc
ggatcatgtacaaaggctggctttagctcggcaagcaccggcaacaatggagattggagt
gaatatggcactggaaatggaagggccgtagaaaatagtagtattcctgctgggtgggct
gtggatagtagtgttggctggggcagtggtggaactgaggggaagtggggaagtggggaa
gttgcacctggtggtggtgaatctactttggatggaagccagagaagttggcatggaaga
ggcaacagcactggtgacaaatttgactccagaaatactaacagtctagatggtcatcgt
aatggtagagtacatgattgccaaactcatacaaatgacgacgcaaacaattctggtggt
gacaaagttcagaactcagctggaagagaatcttccggttggaataacagaggcacgggt
ggcgatcagggcgtgtataatagtggtggtgcttggcaaggcggatcatgtacaaaggct
ggctttagctcggctagcaccggcaacaatggagattggagtgaatatggcactggaaat
ggaagggccgtagaaaatagtagtattcctgctgggtgggctgtggatagtagtgttggc
tggggcagtggtggaactgaggggaagtggggaagtggggaagttgcacctggtggtggt
gaatctactttggatggaagccagagaagttggcatggaagaggcaacagcactggtaac
tggagaggaggcaatgatgatagtcctggctgcagtagcaggggcagaggaaggggaagg
ggaaggggaaggggcagaggtaggaacagcaatgattctgcacaaggaaatgatagtgct
tacagtggatggagcattgcaggtggcaccagttggagcaacaatggaggtagaatcggc
agaggaggctggaatgaaagaggcaggggtggtcgtggtcgtagttggagaggtggtaat
gctggtggccgtagtgggagaggaagcagtggctgcggcggtggtgatggtggcaccaat
acaggtggctggcttgagaggggaagtggttttgctgccagcagctgtgagaaatcaaca
ggggctaatggcagcaacgatggttggggtggctggggaggagttacgaatggtaatgct
agacctggatggggtggtaataatggcggtggtgctgaaaaaagtggctggggtgactgg
ggcagtggcagtggccagggtggtaaagaagagggcggtaaggttgttggtggtggtgat
tggggagctacttctgttaatggcggaggtggctggggtggcaaaactggtggctctcac
atcgaagctagtagatggggtggaaatactgccggaggcaatgctgattctggaggtggc
tgtggcggtggtgatggtggcaccaatacaggtggctggcttgagaggggaagtggtttt
gctgccagcagctgtgagaaatcaacaagggctagtggcagcaacgatggttggggtggc
tggggaggagttacgaatgataatgctggacctggatggggtggtaataatggcggtggt
gctgaaaaaagtggctggggtgactggggcagtggcagcagccagggtggtaaagaagag
ggcggtaaggttgttggtggtggtgattggggagctacttctgttaatggcggaggtggc
tggggtggcaaaactggtggctctcacgtcggaggtggctggggtggcaaaattggtggc
tctcatgtcgaagctagtagatggggtggaaatactgcccgaggcaatgctgattctgga
ggtggctggggtggcattaggactagtgaagttggtcgtgggtggggtggcaaaacaagt
ggaggcactgctggatcatccggcagttggggcagtggcaaaagtagtgaagttggtaaa
aaaggtagctacgctggggctggtgattctggttgtgaagccggtggtgggtgggggaat
aaaactattgtagagaatgctggattttctggaggctggaacgatggcaagactactgac
atcagtagcaaggatggttgggttggaggtggtggctctcagggcaaagccgatggcacg
tggggtagtaaaactagtagagacaatgctggttctggctgttggagtggtggtaaaact
aatgacaatgatagcaaggatggctggggaagaagtggtgcctctcgcggcaaagttggt
ggtggctggggtggtaaaacctgtggagacaatactggtgccgagggtggtagtaaaact
actagagacaatgctggttctggctgttttggtggtcataaaactaacaacaatgataac
aaggatggctggggcaaaagtggtgcctctcgcggcaaagatggtggtggctggggtggt
aaaatctgtggagacaatactggtgccgagggtgactgtggaggtaaaactaacagcaac
gatagcaactatggctggggcagaagtggtgcctctagtggcaaagttggtggctggaat
ggtaaaacctgtggagacaatgccggtgtcgatggtggctgtggtggtagtaaaactagt
agaactgattctggctgttggggtggtggtaaaactaacaacgatagcaaggatggctgg
ggcagaagtggtccctctcgtggcaaagatggtggtggctggggtggtaaaacctgtgga
gacaatgctggttccgatggtggtaaaactagtgacagcagtagcaagggaggtggtggc
ggtggctggatttaa
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integrated database retrieval system
