KEGG   Zingiber officinale (ginger): 122004956
Entry
122004956         CDS       T08725                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 9A-like isoform X1
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03020  RNA polymerase
zof03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    122004956
  09124 Replication and repair
   03420 Nucleotide excision repair
    122004956
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zof03021]
    122004956
   03400 DNA repair and recombination proteins [BR:zof03400]
    122004956
Transcription machinery [BR:zof03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     122004956
DNA repair and recombination proteins [BR:zof03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      122004956
SSDB
Motif
Pfam: Zn_ribbon_TFIIS Zn_ribbon_RPB9 Capsid_VP7 CpXC
Other DBs
NCBI-GeneID: 122004956
NCBI-ProteinID: XP_042415768
LinkDB
Position
7B:complement(1460829..1464088)
AA seq 114 aa
MSAMKFCCECNNILYPKGNRKEKLLLYACRNCDHQEVADNNCVYRNVVHHSAGEFMQLLP
VVAADPTLPRTKSVRCAVCDHPEAVFFQAMSRSEEGMTLFFVCCNPNCGYRWRD
NT seq 345 nt   +upstreamnt  +downstreamnt
atgagtgccatgaagttttgttgcgaatgcaacaatatcttgtaccctaaaggaaacagg
aaggaaaagctccttctctatgcttgtcgcaactgcgatcaccaggaggtcgctgacaac
aactgcgtctacagaaacgtggtgcatcactctgcaggcgagttcatgcagctcttgccg
gttgtggcagctgatccgacacttcctcgcacgaaatccgtgaggtgtgcagtttgcgat
catccagaagccgtgtttttccaggctatgtctcgaagcgaggaaggaatgacgctgttc
ttcgtgtgctgcaaccccaactgtggctacaggtggagagattga

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