Zingiber officinale (ginger): 122005008
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Entry
122005008 CDS
T08725
Name
(RefSeq) mRNA-decapping enzyme-like protein isoform X1
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122005008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122005008
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122005008
mRNA degradation factors
5'-3' decay
Decapping complex
122005008
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DCP1
Motif
Other DBs
NCBI-GeneID:
122005008
NCBI-ProteinID:
XP_042415837
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Position
7B:2142730..2150635
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AA seq
373 aa
AA seq
DB search
MASGKLMPNLDQNSTKVLNLTVLQRIDPFVEEILMTAAHVTLYEFDIELNQWSRKDVEGS
LFVVKRNTQPRFQFIVMNRRNTDNLVEDLLGDFEYEVQVPYLLYRNAAQEVNGIWFYNSP
DCEAIANLFSRILNAYSKVPPKPKLTSKSEFEELEAVPTSSVIEGPLEPITSVATSALDV
ADDVFVNFFSNAMNTGNASNGTVAGQSHLAAAPIPVTTHASSVNPSTLPTVPSIPIPSAS
SVPLVKPLDNLESGNGSGSHAMNLVKPSFFSPALSSALVMPPVSSSVPTAPPLHPPVTMQ
RPYGTPLLQPFPPPTPSASLTPSQNFGSVITRDKVRDALLRVVQVERTLIFYLITIHSVQ
LIQANLHFQYCFL
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgggaagctgatgccaaatctcgatcagaacagtacgaaggtcctcaatctc
actgttctccagcggattgatccgttcgtggaagagatccttatgaccgccgctcatgtc
accctctacgagttcgacatcgagctcaatcagtggagccgtaaggacgttgaaggatct
ctattcgttgtcaagaggaacacacagcccagatttcaattcatcgtgatgaatagacgc
aacacagataatctagtggaggatcttttgggagatttcgagtatgaagttcaagttccc
tatcttttatatcgaaatgcagctcaagaagtaaatggcatttggttttataattcacct
gattgtgaagctattgcaaatctttttagcaggatactaaatgcatattccaaagtacca
ccaaagcctaagctaacttctaaaagtgagtttgaggagcttgaagctgtacctacttca
tcagttattgaaggtcctcttgagccaataacatcagtcgctacatcggcccttgatgtt
gctgatgatgtatttgtgaattttttcagtaatgctatgaacactggaaatgcatcaaat
ggaacagtggctggccagtcacatcttgctgctgcaccaattcctgtaactactcatgca
tcaagtgtcaatccatctactttgccaactgttccatcaattcctattccctcagcttca
tctgttcctctagtgaaacctctggataatcttgaatctggcaatggaagcggcagccat
gctatgaatcttgtgaaaccttcatttttctcacctgctctatcttctgcactggtaatg
cctccagtatcatcctctgttccaacagctcctcccctccatcctccagttactatgcag
cgaccatatggaactccattacttcaaccgtttccacctcctaccccatctgcatcactt
actcctagtcaaaactttggatcagttatcacaagagacaaagttcgtgatgcactattg
agggttgttcaagtggaaaggaccttgattttttatttgatcacaattcattcggttcag
ttgattcaagccaatttgcactttcagtattgctttctttaa
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