Zingiber officinale (ginger): 122005300
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Entry
122005300 CDS
T08725
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 27-like isoform X1
KO
K11851
ubiquitin carboxyl-terminal hydrolase 30 [EC:
3.4.19.12
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
zof01002
]
122005300
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
122005300
04121 Ubiquitin system [BR:
zof04121
]
122005300
Enzymes [BR:
zof01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
122005300
Peptidases and inhibitors [BR:
zof01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
122005300
Membrane trafficking [BR:
zof04131
]
Autophagy
Mitophagy
Other mitophagy associated proteins
122005300
Ubiquitin system [BR:
zof04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
122005300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
Cnl2_NKP2
Motif
Other DBs
NCBI-GeneID:
122005300
NCBI-ProteinID:
XP_042416220
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All DBs
Position
7B:complement(11645804..11656396)
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AA seq
589 aa
AA seq
DB search
MKHRREVNIYPLIHKVRHGYKILLAIGELFPPQYRLAASILGLGMGVSSLYMVLREGKLS
SFQLSWGTQPDDSSKIVYVAGLRNLGNNCFLNVVLQALASCSWFVRFLQNVPVSDVESIV
ECMPLLASLATLLEDLCIIHDEKTILDPRRLMLALSFYANGFTLTKQQDAAEALLHLLSS
LEEEILHSYMLHRSSLAEIMSIPSRIHKLNSKTQTDLELWRTFVCGPFDGAIRSTLTCRS
CSTVLLWDIEHFLSLPLAPVLDSNGDIIEGCSVIDCLKKFTTAEYLENYHCDRCWHIAAI
KCLSLTSNNNGEKLDKLKHCVNLGCCDCKNLLDQQEIKWSGFSCVLKQLSITRCPKILCI
HLQRASMNDYGELIKLQGHVSFPFILDLFPFTRTSKTLGEGPLVPCTRENANRKLQPLDP
QLMQMYIQYKKQSLELVHGTAGEDSLLKGIPTNNFKNPTNELPHGTSGEMIAIGKHNVSD
KKTEIAAVASDSQALSGIKGSEAITGSYYRLSSVVEHYGKSGSGHYAIYRRVTSESFGGN
SNSTPETEQSQWFYVSDHEVLNVSIETVFAAEASLLFYERIDGNFHIAA
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaagcatagaagggaagtgaatatctacccccttatccacaaagtcagacatggatac
aaaatattgttggctatcggagaattatttccacctcaatatcgtcttgctgctagcatt
cttgggcttgggatgggagtgagtagtttgtacatggtgttgcgagaagggaaactgagc
agttttcaattatcatggggaacccagccagatgattcatccaagattgtttatgtggct
ggcttaagaaatctgggaaataattgttttcttaatgtagttttgcaggcactcgccagc
tgcagctggtttgtccgctttcttcagaatgtaccagtgagtgatgttgaatctattgta
gaatgtatgccacttctagcttcattggcaacattattagaagatctatgtattatccat
gatgaaaagactatattggatccacgaagattgatgcttgccttaagtttctatgctaat
ggtttcacattaaccaaacagcaggatgctgcagaagcacttcttcatcttttgtcttct
ttagaagaggaaattttgcactcttacatgctgcacagaagttctctcgctgaaataatg
agtattccttctaggattcataaactaaacagcaaaacccagacagatttggagctatgg
agaacttttgtttgtgggccatttgatggagcaatcagaagcacattaacttgcaggagt
tgttcgactgtgctattgtgggatattgaacactttctttcattgcctctcgcacctgtt
ctcgacagtaatggtgatattatagaagggtgcagtgtgatagattgtcttaagaagttc
acaacggctgaatatctagagaattaccactgcgatcgctgttggcatattgctgctata
aaatgcttgtctctcacatcaaataacaatggggaaaaacttgataagcttaagcattgt
gtcaatcttggttgttgtgattgcaaaaatctacttgatcaacaggaaattaagtggtct
ggtttttcatgtgtattaaaacagctaagtataactcgatgtcctaagattctgtgcatc
catttgcagcgtgcttcaatgaatgattatggtgaacttatcaagcttcagggtcatgtt
tcttttccttttattctggacctctttccttttaccagaacaagtaaaacattgggagaa
ggacccctagtgccatgtactcgcgaaaatgcaaatagaaagctgcagccactagatcct
caattgatgcaaatgtatattcagtacaagaaacagagtttggaacttgtacatggaact
gctggagaggactctttgttgaaaggtattcctacaaataatttcaaaaacccaactaat
gaattgccacatggcacgtctggtgaaatgatcgccataggcaagcacaatgtttcggac
aagaagactgaaatagctgccgtagcttctgattcccaagcgttgtcaggtataaagggt
agtgaagctattacaggctcctattatcgtctttcatctgttgttgaacactatggaaaa
tctggaagtgggcattacgcaatctataggagagtaacaagcgagtcatttggtggcaat
tcaaatagcactccagaaactgaacaaagtcaatggttttatgtctcggaccatgaagta
ttgaatgtttccatagagactgtatttgctgcagaggccagtctgctcttctacgagaga
attgatgggaacttccatatagccgcataa
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