Zingiber officinale (ginger): 122005341
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Entry
122005341 CDS
T08725
Name
(RefSeq) uncharacterized WD repeat-containing protein C17D11.16-like isoform X1
KO
K14791
periodic tryptophan protein 1
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
122005341
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
90S particles
Other 90S particles
122005341
Pre-60S particles
Other pre-60S particles
122005341
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
WD40_RFWD3
Beta-prop_RIG_2nd
WDR55
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
WD40_Gbeta
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_EML
Beta-prop_Aladin
EIF3I
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
WD_LRWD1
Beta-prop_WDR75_2nd
Beta-prop_HPS5
NBCH_WD40
Beta-prop_WDR41
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
RMC1_N
Beta-prop_VPS8
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
122005341
NCBI-ProteinID:
XP_042416285
LinkDB
All DBs
Position
7B:complement(12365592..12382436)
Genome browser
AA seq
503 aa
AA seq
DB search
MISAISWVPKGASKVSPVEVEPPSIEEIEEILSTGALEKGGDSDVEEGEDMDVDASIEED
EVVHALAAAKALSNKADKSSSCFPDIADSLRELDMDHYDDEDDGIELFSTGLGNSYYPSN
DMDPYLKNKDDDDDDDDDDEDDDEIEDMTIEPTDAVIVCARNEDEVSHLEVWIFEESEDG
DSNMYVHHDIILADFPLCTAWLDCGRKGDEKGNFIAVGSMEPAIEIWDLDLVDEVQPFMV
LGGVSRKKKTGKKTSVKYKKNSHRDSVLGLAWNKEVRNVLASASADKTVKIWDVVTGKCA
VTVEHHKDKVQAVAWSRYSPEILISGSFDPSVAVMDMRSSSQVCNEWSVTSDVESLAWNP
HSENTFVASLNDGTVQGFDIRALSDSSSSASSNSKPTFTLKAHDKTVTSICFNPAAPNFL
ATGSTDKTVKLWDVSNNQPSCIVSQKFKAGAIFSIAFSDDCPFLLAIGGSKGKLEVWDTL
SEPKIANRYGKRGDGSNPAPSSD
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgatatctgcaattagttgggtaccaaagggagcttctaaggtctccccggtggaggtt
gaaccaccctccatagaagaaattgaggagattttgagcacaggagcattggaaaaaggt
ggagacagtgatgtcgaggaaggagaggatatggatgtcgatgcttccatagaagaagat
gaggtagtgcatgcattggctgcagctaaagctttgtctaacaaagcggataagagttct
agttgtttccctgatatagctgatagccttcgagaacttgacatggatcactatgatgat
gaggatgatggaattgagctatttagtactggtctaggcaacagttactatccaagtaat
gatatggacccttatctgaagaacaaggatgatgatgatgatgacgatgacgatgacgaa
gacgacgatgagatagaagatatgaccatagaaccaactgatgcagttatagtctgtgca
agaaatgaagatgaagtcagtcatcttgaggtttggatttttgaagaatcggaggatgga
gattcaaacatgtatgttcatcatgacataatccttgcagattttcccctctgcacggca
tggttagattgtggccgtaaaggtgatgagaaaggcaatttcatagctgttggctccatg
gagcctgctattgagatatgggaccttgatcttgttgatgaagttcaaccttttatggtc
ctagggggtgtctcgagaaagaagaaaacagggaaaaagacctccgtcaaatacaaaaaa
aatagtcatagggactctgtacttgggcttgcatggaataaggaagtgaggaatgttcta
gctagtgcaagtgcagacaaaactgtgaagatatgggatgtagttactggcaaatgtgct
gtaactgttgagcatcataaagacaaggtccaagcagttgcatggagtcgatattctcct
gaaatacttatcagtggttcttttgatccatcagttgctgtgatggatatgagatcaagt
tctcaagtctgcaacgaatggtctgtcacatctgatgttgaaagtttagcatggaaccca
cactcagagaacacatttgtggcaagtcttaacgatggtactgttcaaggtttcgacatc
cgggctttgtcagactccagctccagcgccagctctaattccaaaccaactttcacactt
aaggctcatgataaaactgttacttcaatctgcttcaaccctgcagctccaaatttcctt
gctacaggttcaacagataaaacggtgaaattgtgggacgtgtcaaacaatcaaccatca
tgcattgtatctcagaaattcaaggcgggtgcaatattctctatagccttttcagatgat
tgccctttcttgttagctattggaggttctaaagggaaattggaagtgtgggacacccta
tctgaaccaaaaattgccaatagatatggcaagagaggtgatggaagtaatccagcacca
tcatcagattga
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