Zingiber officinale (ginger): 122005432
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Entry
122005432 CDS
T08725
Name
(RefSeq) putative tRNA pseudouridine synthase isoform X1
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
zof03016
]
122005432
Enzymes [BR:
zof01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
122005432
Transfer RNA biogenesis [BR:
zof03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
122005432
Prokaryotic type
122005432
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
122005432
NCBI-ProteinID:
XP_042416398
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All DBs
Position
7B:complement(17477758..17496110)
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AA seq
527 aa
AA seq
DB search
MAAAAAACALRVPFDSRILPNLTFRALFCNLRSSRVLCSSTLSLPSTTTCLDGTEIDGGG
GGGKRWESFCKKKVVMRVGYIGTDYRGLQKQRDAHDLSTIEAELESAIYKAGGILDSNFG
KLQKIGWKRSSRTDKGVHSLATTISLKMEIPDLAWKDDPSGIVLANYVNSNLPNNVKVFS
ILPSQKSFDPRRECSLRMYSYLLPAEIIGIGGNCSSKEVTKHLEEFNSILKGFEGERPFH
NYTVRSKYRKPPSGKRNSMKQSRLKLDTLPSGVEESSGDVGNFHVEDATQSEYEERAILS
CNTDDEEEVDESPDEKRNENKNSNLPPPVRARWLHEPDERDRLNASHFRKIFRCSCGDLE
TSSGRNHVVLSICGESFMLHQIRKMVGTAVAVKRGLLPRDVIELSLAKFSRIVLPLAPSE
VLILRSNHYTSSNRPGNTTRPEVQLMAESQEIQAAVDNFYQNVLLPQLSKFLDPLESPWK
EWVENLDAFTSISDAELNDVRTAFHVWKEGFFKAKKIQIQKIQIQIS
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcggccgcctgtgcgcttcgtgtacccttcgactcccgtatccttccc
aacctcaccttccgcgcccttttctgcaaccttagatcctctagagtgctttgctcctcc
actttgtctcttccatctactacgacctgcttggatggcaccgaaatcgatggaggtggc
ggcggaggaaagaggtgggagtcattctgcaagaagaaggtcgtcatgcgagttggatac
atcggaaccgattacagaggtcttcagaagcagcgggacgctcatgatttatcaactatt
gaagctgaactggagtctgccatatacaaggcaggagggattcttgatagtaattttgga
aagttgcagaaaattggttggaaaaggagtagccgaactgacaaaggagttcattctttg
gccaccacaatttctctgaagatggaaatacctgatcttgcctggaaggatgatcctagt
ggcattgtactcgctaattatgttaactctaacctgcccaataatgtgaaggttttcagt
attttaccttcccaaaaaagctttgatccaagacgggaatgtagtctccgtatgtactcc
tatcttcttcctgcagaaattattggcattggaggcaattgcagctccaaagaagtcacc
aagcatttggaagagttcaacagtatactgaaaggttttgagggagagcgccctttccat
aactacacagttcgttccaaatataggaaaccaccttctggtaaaagaaactcgatgaaa
caatcaagactgaaactagatacattgccatcaggagttgaggaaagtagtggtgatgtt
ggaaatttccatgttgaagatgctacacaaagtgaatatgaagaacgggccattctatca
tgtaacactgatgatgaggaggaagtagatgaatctccggatgaaaaaagaaacgaaaat
aagaattccaatcttcctccgcctgtacgtgcaagatggcttcatgaaccggatgaaagg
gacagattaaatgcgtctcacttcagaaaaatttttaggtgctcttgtggggatctagag
acatcttctggaagaaaccatgtcgtgttgtcaatatgtggtgaatctttcatgttgcat
cagatccgcaaaatggttggaaccgcagtggcagtgaagcggggattgctacctagagat
gtcatcgagctatctctggctaaattttctcgtatagttctaccacttgctccttcagaa
gtattgatcttgaggagcaaccactatactagtagcaatcggcctggaaatacaacccgg
ccagaggtgcaattaatggctgaatcacaggaaatccaggcagccgtcgacaatttctac
cagaatgtgctattgcctcagctctccaagttcctcgatccattggagtctccatggaaa
gaatgggtggaaaacttggatgcattcactagcatctcagatgcagaattgaatgatgtc
agaacagcatttcatgtgtggaaagaaggcttcttcaaagcaaagaaaatccaaatacag
aaaatccaaatacaaatttcctag
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