Zingiber officinale (ginger): 122005639
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Entry
122005639 CDS
T08725
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122005639
03041 Spliceosome [BR:
zof03041
]
122005639
03036 Chromosome and associated proteins [BR:
zof03036
]
122005639
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122005639
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122005639
mRNA cycle factors
Common to processing body (P body) and stress granule
122005639
Spliceosome [BR:
zof03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122005639
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122005639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122005639
NCBI-ProteinID:
XP_042416692
LinkDB
All DBs
Position
7B:30410543..30426592
Genome browser
AA seq
611 aa
AA seq
DB search
MRASWADAVANAESSAGAADTAPRRTNSYVPPHLRNRPQASEAPVVGNGPSAARLPSAYP
PQASTGSRWGATPSRDLGRSGLDGGRGGGGWNTRGGGWDRRESEVNPFLNEEETSKAIFD
VQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEGLNQNIKRCKYVKPTPVQRHAI
PISVAGRDLMACAQTGSGKTAAFCFPIICGIMRGPPSQRQRGSRTVFPVALILSPTRELS
IQIHEEARKFSYQTGVRAVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERAKVSLQ
NIRYLALDEADRMLDMGFEPQIRRIVEQMDMPPPGQRQTMLFSATFPKAIQRLASDFLYN
YIFLAVGRVGSSTDLIVQRVEFVPDSDKRSYLMDLVHAEKTNETHGKQALTLVFVETKKG
ADSLEHWLCMNGFPATTIHGDRTQQEREQALRSFKSGATPILVATDVAARGLDIPHVAHV
INFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNESNISLAKSLSELMQEAKQEVPEWLAR
YALARPYGSGGGRSRRGGGPRFGGRDFRRDSNYNRGGGGSDHGGYGGGGAYGSSSGQGGG
HSGAGFASAWD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcttcatgggctgatgcagttgcgaacgccgagagctcggcgggcgcagcagat
actgcccctcgccgaactaactcctacgttcctcctcatcttcgtaaccggccgcaagct
tcagaggcccctgtggtcggtaacggcccttctgccgctagattgccttctgcttatcct
ccgcaagcatctacaggaagccgttggggtgctactccttcccgtgatttaggtaggtct
ggtcttgatggtggccgtggtggcggtggttggaacaccagaggcggaggttgggaccgc
agggagtcggaggtgaacccatttttgaatgaggaagaaaccagcaaagctatttttgat
gttcaagagaacactggcatcaattttgatgcctacgaggacattccagtcgagactagt
ggtgagaatgtgcccccacccgttaacacatttgcagagatcgatttgggggagggattg
aatcagaacattaagaggtgcaagtatgtgaagccaaccccagtccagcgtcatgcaatc
ccaatatctgtcgctggtagggacctgatggcctgtgctcagactgggtctgggaagaca
gctgctttctgcttcccaatcatctgtgggatcatgagagggccaccttcacaaaggcaa
agaggctcgaggacagtgtttcctgttgctttgattttatcacctactcgagagctctct
atccaaatacatgaggaagcaagaaagttttcttatcaaacaggcgtgagggctgttgtt
gcctatggtggtgctccaattaatcaacagttgcgggacttagagagaggggttgacatt
cttgtggcaactcctggtcgtcttgtagatttgcttgagagggctaaagtgtcattacaa
aatattagatatttagcactggatgaagctgatagaatgcttgatatgggttttgagcca
caaattaggagaattgtggagcaaatggatatgcctccaccaggtcaaaggcagacaatg
ctgtttagcgctacatttccaaaggcgatacagagattggcctctgattttctttacaat
tacatctttctcgctgttggaagggttggctctagtactgatttaattgttcagagagtt
gaatttgttccagattctgacaaaagaagttaccttatggaccttgtccatgccgaaaaa
actaatgagacccatgggaagcaagcattgactttagtctttgtggaaacaaagaaagga
gctgattcactggaacattggttgtgtatgaatgggtttccagcaaccaccattcatggg
gatagaacgcagcaggaaagggagcaagccttgagatccttcaagagtggtgcgactcct
atcttagtcgcaacagatgtcgctgctcgtgggcttgatatcccccacgtggcacatgtt
atcaattttgacctccctaatgatattgatgactatgtgcaccgcattggaagaactggg
agagcaggaaagactggtttggccactgcttttttcaacgagagcaacatttccctggcc
aagtcattgtcagagcttatgcaggaagctaaacaggaggtgccagaatggcttgctcga
tatgcgttagctcgtccctatggcagcggtggcggtagaagccgccgaggtggtggacct
cgatttggtggccgtgacttccgcagagattccaattataataggggtgggggaggcagt
gatcatggtgggtatggaggtggtggtgcctatggctcatcttctggacaaggaggtggg
catagcggagcaggttttgctagtgcttgggattag
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