Zingiber officinale (ginger): 122006480
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Entry
122006480 CDS
T08725
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3-like isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
zof04812
]
122006480
Cytoskeleton proteins [BR:
zof04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
122006480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Katanin_con80
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_IFT140_1st
eIF2A
Beta-prop_HPS5
Beta-prop_VPS8
Beta-prop_IP5PC_F
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_RIG_1st
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
122006480
NCBI-ProteinID:
XP_042417941
LinkDB
All DBs
Position
7B:complement(98620860..98628960)
Genome browser
AA seq
783 aa
AA seq
DB search
MATAKRAYKLQEFVAHSSNVNCLKIGRKTSRVLVTGGEDHKVNLWAIGKPNAILSLSGHM
SAVESVGFDSSETLVAAGAASGSIKLWDLEEAKIVRTLTGHRSNCITVDFHPFGEFFASG
SLDTNLKIWDIRRKGCIHTYKGHTRGVNAIKFTPDGRWVVSGGEDNTVKLWDLTAGKLLH
DFKFHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPESSGVRSMTFNPDG
RTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDMNIHEGKLLGCSYNQSCVGVWVVDLS
RIEPYANGAAAKLNGEAKSTPSGNLTMQTESNIKSNMVKLSLSQSSESNPKETKSVPSST
GTAILSTPQKTGTSASPKPTAIAPSVPSATTVKRSSSKSNVTTSLQSISKTNIIPVIVPR
NSPRPELSSDSSKSTEVGRTIQSDIQSKFSSSQNVSNVREGSDKEDVSKSGFVASRNTEQ
IELLGQNAISSDIPVTQAMTVAGSNNSDDVRRVTAARVRTNLFRESPANYDQENHNIRIQ
KPTEACSFVVPKGGRTRSLVANFEREQRRALSPSYDGPTLSSFPEAGAGAISYSLRSRNQ
YAEEETISALDEDSIAFLLKKHDQFLNLVQSRLTKLQIVHRLWQRNDVKGVINAIEQMSD
HGVSSDVVDNLKDKSDLITLEICTSLLPLLTSLLESKMDRHSSVSLEMLLKLVRIFGPVI
HSALSADPSSVGVDLQAEQRLERCNLCFIELEKIKQKIPSLTRKGGSIAKTAQELNLALQ
EVL
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggccactgccaagcgcgcttacaaactacaggaatttgtagcacattcttccaatgtg
aattgcctaaagattggaaggaagacttcgagggttcttgttactggaggagaggatcac
aaggtcaatctttgggctattggaaaacccaatgccatattgagcctatccggacatatg
agtgcagttgagtcagtaggtttcgactcgtctgagacactagtggctgcaggtgcagct
agcggatcgataaagttgtgggatttggaagaagcaaaaattgttcgtactctcacaggc
cacaggtcaaactgtataacagtcgattttcacccttttggagaattctttgcttctgga
tcactagatacaaacctaaagatatgggatatcagaagaaaaggatgtatccatacttac
aaaggtcatacacgaggagttaatgccattaaattcactccagatgggcggtgggttgtt
tctggtggggaagataacactgtgaagctttgggatcttactgctggaaaacttctgcat
gatttcaagttccatgagggtcagattcagtgcatagatttccacccacatgaatttcta
ctagcgacaggttctgctgataggactgttaagttctgggatcttgaaacttttgagtta
ataggatctgctggacctgagagttctggtgtgcgttctatgacctttaatcctgatggg
agaactttactttgcggactgcatgaaagtctgaaggttttttcttgggaaccaataaga
tgccatgatgctgttgatgtggggtggtctagattatcagatatgaatattcatgaagga
aaacttcttggatgttcatataaccaaagctgtgttggagtatgggttgtggacctctct
cgcattgaaccatatgccaatggtgctgctgccaaactaaacggggaagcaaaatctaca
ccaagtggtaatttaactatgcaaactgagagcaatataaagtctaacatggtgaagtta
tccttatcacaaagctcagaatctaatcctaaggagacaaaatcagtaccatcaagtaca
ggcacagccatccttagcactcctcaaaagacagggacaagtgcttcccccaagccaact
gctatagcaccttcagtaccttctgctactactgttaaaagaagttcctcaaaatctaat
gttaccacaagtcttcagtccataagcaaaacaaatattatacctgttattgtcccccga
aatagccccagaccagagttatcctctgattcttctaaatctactgaagttggaaggaca
atacaatctgatattcagtcaaaattttctagttcccaaaatgtatctaacgtcagagaa
ggttcagacaaagaagatgtctctaaatctggatttgtggcaagtaggaatactgagcag
attgaacttctaggacaaaatgctatatcttctgacattcctgtaactcaagcaatgaca
gtagctggatcaaacaactcggatgatgttcgacgtgttacagcagcaagggtcaggact
aatttgttcagagagtcacctgcaaattatgatcaggaaaatcacaatatcagaatccaa
aaaccaacggaagcatgctcttttgttgttcccaaaggaggaagaacaaggtcgcttgtt
gcaaattttgagagggaacaacgtagggcactctctccaagctatgatggaccaacctta
agtagttttcctgaggcaggagctggtgccatctcatattctctgaggagccggaatcag
tatgctgaagaagagacaatatctgctttggatgaggattctattgcttttctattgaaa
aaacatgaccaatttttaaatttggtgcaatcacgattgaccaaattacagatagttcac
cggctttggcaaagaaatgatgttaaaggtgtcataaatgcaattgagcagatgtctgat
catggtgtatcttctgacgtagtagataatctcaaagataaaagtgaccttatcacttta
gagatatgcacttctcttcttccacttctcaccagccttcttgaaagcaagatggatagg
cattcgagtgtttccttagaaatgttgttgaagctggttaggatctttggtcctgtaatc
cattcagctttgtcggcggacccatcttctgttggtgttgatcttcaagcagaacagagg
ttggagcgctgcaacttgtgcttcattgagctggagaagatcaaacaaaaaattccttcc
ctgacaagaaaaggaggatctatcgcaaagactgcacaggagctgaatcttgctcttcag
gaagtgctatga
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