Zingiber officinale (ginger): 122006602
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Entry
122006602 CDS
T08725
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122006602
03015 mRNA surveillance pathway
122006602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122006602
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122006602
mRNA cycle factors
P-body specific factors
122006602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
122006602
NCBI-ProteinID:
XP_042418096
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Position
7B:102411618..102421514
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AA seq
568 aa
AA seq
DB search
MKDPTDRTKVAVRRLPPSMSQTTLVEQIDSRFAGRYDWFCFRPGKNSQKDHIHSRAYVNF
RKPEDVVEFAEYFDGHIFVNEKGAQYKALVEYAPSQQIPKLWLKKDGREGTISKDPEYIE
FLELVSKPVEHLPSAEIQLERKEAERAGTTKDTPIVTPLMDFVRRKRAAKNGSQKLSGSG
KGSKRTSGVSASTSNSSAKRGSERRRIATSTYVLRDSMKKGGLKDKPTYILMPRKKDHVS
AMDKSVSANSTIEKEAVEDEFGIESGKSRIVLLKGKERESSDFGQASRVWAQHQIVTSSV
KGSPILTSRKNQASGRIIKSILTKEGCTDVPHINTTHNEQQMQVVNGEDKHSSRPPCASL
NSKDHMPRISPFVSASDDDKKYVDDKAAVNNKHGSVLTSEKHERRTRNRDRPDCGVWAPL
RRPDRSQSNDGMLTEASQESANSLESLSLSQQPFGKVREDEMAIQTRNGRGNNLPAVYET
SLGYGERKPDLSYASRSEDIKVHKGGRVDYSGAENGSHRHVRRRGSLRSLKDVDYSLNAS
EGKNSKRGPTVYNSHERQVWVQKSGSAS
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatcctacggaccggacgaaggtcgcggttcggcgcttgccgccgtccatgtct
cagacgacgctggtggagcagatcgacagcaggttcgcgggccgctacgattggttctgc
tttcgccctgggaagaacagccaaaaggaccacatacattctcgagcatatgtcaacttt
agaaaaccagaagatgtggttgaatttgctgagtattttgatgggcacatattcgtcaat
gagaagggtgctcaatataaggctcttgtagagtatgcaccatctcaacaaattccaaag
ctatggttaaagaaagatggccgtgaagggactatatctaaggatcctgaatacattgag
tttcttgaacttgtatcaaagccagtagaacatcttcccagtgcagaaattcagttagag
aggaaagaagctgaaagagcgggcactacgaaggacacacccatagtaacaccattaatg
gattttgttcgacgaaaaagagcagctaaaaatggttctcagaaattatctggtagtggt
aaaggtagtaaacgaacttcaggagtttctgctagcacttcaaattcctctgcaaaaaga
ggttctgagaggcgtagaattgcgacttcaacttatgtgctaagggatagcatgaaaaaa
ggaggccttaaagacaaaccaacatacattttgatgccaaggaagaaagaccacgtgtct
gccatggataaatctgtttctgcaaactctacaattgagaaggaagcagtggaagatgaa
tttggaattgaatctggaaaaagcagaattgtgctcctgaaagggaaggagagagaatct
tctgattttggccaggcttctagagtttgggcacaacaccagattgtaacatcttcagtc
aaaggttcacctattttaacatctagaaagaaccaagcgagtggaaggatcattaaaagc
atacttacaaaggaaggttgtacagatgtgccacatataaatacgacccataatgaacag
caaatgcaggtggtaaatggagaggacaagcattcatctcgacctccctgtgcaagcttg
aattccaaagatcacatgccacgtatatcaccatttgtatctgcttctgatgacgataaa
aaatatgtagatgataaggctgctgtaaacaacaaacatggttctgtattaaccagtgaa
aagcatgaaaggcgaactaggaatagagacagacctgattgtggtgtttgggctcctctt
cgtcgtccagatagatctcaatctaatgatggaatgcttaccgaagcatcccaagagtca
gcaaattctttagaaagcttatccttatctcaacagccatttgggaaagttagggaggat
gagatggctattcagacccgcaatggacgtggcaataacttgcctgctgtctatgaaaca
tcattgggttatggagaaagaaaaccagatctttcttatgcaagtagaagtgaagacata
aaggttcacaaaggtggacgagttgattattctggagctgaaaatggttctcatagacat
gttcgccgtcgtggatcattacgtagtctgaaggatgtagattactctttaaatgcttca
gaaggaaagaattctaagagaggtcctaccgtctataattctcatgagcgacaagtatgg
gttcagaagtctggctcagcttcatga
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