Zingiber officinale (ginger): 122006852
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Entry
122006852 CDS
T08725
Name
(RefSeq) pre-rRNA 2'-O-ribose RNA methyltransferase-like
KO
K14857
AdoMet-dependent rRNA methyltransferase SPB1 [EC:2.1.1.-]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
122006852
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
122006852
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Spb1_C
FtsJ
DUF3381
Methyltransf_23
PUA_2
Dsc3_C
Motif
Other DBs
NCBI-GeneID:
122006852
NCBI-ProteinID:
XP_042418443
LinkDB
All DBs
Position
7B:109504721..109512052
Genome browser
AA seq
848 aa
AA seq
DB search
MGKVKGKQRQDKYYHLAKEQGYRSRASFKLLQLDAKYRFLPSARSVLDLCAAPGGWLQVA
VNHAPVGSFIVGVDLFPIRPIRGAHALAEDITTPKCRAAIKRLMDSNGCSAFDVILHDGS
PNVGGAWAQEATSQSALVVDSIRLATNFLAPKGTFVTKVFRSQDYSAIIFCLKQFFDKVE
VTKPVASRSTSAEIYVIGVRYKAPAKIDPRLLDVKHLFQGAIEQPKVVNVLRGSKQKRNR
EGYEEGNTTLWKVGLVSDFIQSESSVEFLSSVNALSFDDPACFSFRDHELTTDEIKSLCE
DLYVLDKKSFKQLLKWRIHIRNALSKEKVASTANEDKIVIKEDDAKEDEQEDEDDKVLNE
MEELSQLMDKKKKKAKKLLSKRRAKDKARKAMGVQIDATEDSYIERDLFSLSAIKGKKEL
LAIDSTDLNDEYGEDNLVDSDDEEAQREIEKEDSSDEMDSDEEQRRYNEQLEEELDEAYE
RYVTRKGGSTKERKRAKRTSDDLDLIEEENDGDDLVHPVEESDQKQNKESNPLMVPIVED
EQPTEEQMVERWFGQDVFTEAATDGMLEDSESDEEKGAKIVKVPAKTKENIKQPLDLSLP
KSLPKSKNTEQDGFEIVPAEPMETSDDSSSSDESDDMNDDTKAEILAYAKKMLRKKQREQ
ILDDAYNRYMFDDIGLPKWFEDEEKRHCKPIKPITREEVAAMRAQFREIDARPAKKVAEA
KARKKRAAMKKLEKARQKANSIVDQTDISERSKRKMIDQVYKKAEPKKPQKEYVVAKKGV
RVKLGKGKVLVDRRMKKDARSYGSGKPGKGGFKKGNKTTKGKKAQKGNQSAKTNRSEKKG
KGKGRKHA
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaggtgaaggggaagcagcgtcaggacaagtactaccaccttgccaaggagcaa
ggttaccgctctcgtgcctccttcaagctcctccagctcgacgccaagtaccggttcctc
ccctctgcccgctccgtcctcgacctctgcgccgccccaggcgggtggctccaggtagct
gttaatcatgctcccgtaggatccttcatcgtcggcgttgatctcttccccatccgccct
attcgcggtgctcatgcccttgctgaggacatcaccacccccaaatgccgcgctgccatc
aagcgcctcatggactccaacggctgctctgccttcgatgtcatcctccatgacgggtct
ccgaacgttggaggcgcctgggcccaggaggccacctcacagtcggccttggtcgtggat
tcgatcaggttggccactaatttcttggctcctaaaggaacctttgttaccaaggttttc
aggtcgcaagattacagtgccattattttttgtctcaagcagttttttgataaagttgaa
gtgactaaaccagttgcaagtcggtcgacctctgcagaaatttatgtaattggggtaaga
tataaggcccctgcaaagatcgatcctcggcttcttgatgtgaaacatctatttcaagga
gcgatagaacaacctaaggttgtgaatgttcttagaggatcaaaacaaaagagaaatcgt
gaagggtatgaagaagggaatactacactgtggaaggtgggcctagtttctgattttata
cagtcagagtcatcagtggaatttctcagctctgtaaatgcactatcatttgatgatcca
gcatgtttttcttttagggatcacgagttaaccacagatgagattaaatcgctctgtgag
gatttgtacgtacttgacaaaaaaagtttcaagcagctgttaaaatggcgcatccacatt
agaaatgcattgtctaaagagaaggtggcttcaacagctaatgaagacaagattgttatt
aaggaagatgatgcgaaagaggacgagcaagaggacgaggatgataaagttctaaatgaa
atggaagagctgtcacaactgatggacaaaaagaaaaaaaaggcgaagaaacttctttca
aagcgccgagctaaggataaagcacgaaaagcaatgggagtacaaattgatgccacagaa
gacagctatattgagagggatttgttttctctttctgctatcaagggtaagaaagaattg
cttgcaattgattcaacagacctcaatgatgaatatggcgaggataatttagtggacagt
gatgacgaagaggctcagagagaaatagaaaaggaggattcatccgatgaaatggactct
gatgaggagcaaaggagatacaatgaacaacttgaagaagagcttgatgaagcatatgaa
cgatatgtgaccagaaaggggggaagcaccaaagagcgaaaacgtgcaaagaggacatct
gatgatctggatttaatagaggaagaaaatgatggtgatgacctcgttcatcctgttgag
gaatctgatcaaaaacaaaataaagaatcaaatcctctaatggtacctattgttgaagat
gagcagccaactgaagagcaaatggtggagagatggttcggtcaagacgtgttcactgag
gcagcaacagacggcatgcttgaagacagtgaaagtgacgaggaaaaaggagcaaaaatt
gtcaaagttcctgcaaagaccaaggaaaacattaaacaaccgctggatttgagcctccct
aaaagccttcctaagtcaaagaatactgagcaggatggctttgaaatagttccagctgaa
cccatggaaacaagtgacgactcttcatcttctgatgaatcagatgacatgaatgatgat
acaaaagctgaaatattagcttatgcgaagaagatgctgagaaagaaacagagagagcag
atactcgatgatgcctataacagatacatgtttgatgacataggtttaccaaaatggttt
gaagatgaggagaagaggcattgcaaacccatcaagcccatcactcgagaagaagttgct
gcaatgcgggcacaatttagagagattgatgctcgacctgctaagaaagtggcagaagcc
aaagcaaggaagaagcgggctgctatgaaaaagttagagaaggctcgacaaaaggcgaac
tccattgtagatcagactgacatatctgaacgttccaagaggaagatgatcgatcaggta
tacaagaaggctgaaccaaagaagcctcaaaaggagtatgtcgttgcaaagaagggtgtc
cgagtgaaattgggcaagggtaaggtgcttgtggaccggcggatgaagaaggatgctagg
tcttatggctccggaaagccaggcaagggtggttttaagaagggaaataaaactactaaa
gggaagaaggcccagaagggcaatcagtctgcaaaaacaaacaggtcggagaagaaaggc
aagggtaagggacgcaagcatgcctaa
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