KEGG   Zingiber officinale (ginger): 122007005
Entry
122007005         CDS       T08725                                 
Name
(RefSeq) pinin-like
  KO
K13114  pinin
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03013  Nucleocytoplasmic transport
zof03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    122007005
   03015 mRNA surveillance pathway
    122007005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zof03019]
    122007005
   03041 Spliceosome [BR:zof03041]
    122007005
Messenger RNA biogenesis [BR:zof03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     122007005
Spliceosome [BR:zof03041]
 Complex C
  Other components
   EJC/TREX
    122007005
SSDB
Motif
Pfam: Pinin_SDK_memA RSB_motif
Other DBs
NCBI-GeneID: 122007005
NCBI-ProteinID: XP_042418676
LinkDB
Position
7B:114368001..114388452
AA seq 407 aa
MASSAAEKTADELRKEIQELHRRQREITERLRDPRGIRRGGLAQGSAAGPRNRGVVRPAV
DAEDQPPQKRRLSSAIVKLEDGEIKEDAGAAEGGNTEDPLSRGGIAANMDRNDQNMSYPQ
SNVGGFRRDGGSRMRRMDIDMALPEPTPREPKLIQDASLIKRNKRMLGQLLGTLEKFREE
DEKLSSTEAYMRRSDLLKRAEEKAREESEKLRQQEREQIAEKRKRDLTLRARVAAKAQEK
KWELMFLSWSEHHKKLSNFLRTKAEPPIYYLPAKPLLDDPAAVEQQREQAFIKWKTARRA
ELSDYQKQIEEQFLSNVEKQLERWQNARNNRRADSLVNLQETMDKELETHQLEHGPKTRR
IAGGNDDEEDVEDIAAEDELMDEVLGAHDQERIDADATKISDVDNGN
NT seq 1224 nt   +upstreamnt  +downstreamnt
atggctagcagcgccgctgagaagacggcggacgagctccgtaaggagattcaagaactc
catcgacgacagagggagatcacggagcggctccgagatccaagaggcatccgccgtggt
ggcctggctcaaggaagcgcagcaggaccccgcaaccgcggtgtcgttcgacctgcggtt
gatgcggaggaccagccaccgcaaaagagacgcctgtcttctgccatcgtgaaattggag
gatggagagatcaaagaagatgcaggcgcagcagagggtggcaacacagaagatcctctt
tccaggggtggtattgctgccaacatggataggaatgatcagaatatgtcttatccacag
agcaatgttggtgggtttagaagggatggtggttctaggatgcggaggatggatattgat
atggcattacctgagccaacaccaagagagcccaaattaattcaggatgctagcttgata
aagaggaataaaagaatgctgggtcaactattagggacgctggagaaatttcgtgaagag
gacgagaaattatcatcaacagaagcatatatgcgtagatcagatttattgaaaagggca
gaagaaaaggctcgagaagaaagtgaaaaattaaggcaacaagagcgagagcaaattgct
gagaaacggaaacgtgatctgactcttcgagctcgtgttgctgctaaggcacaagagaag
aagtgggagttaatgtttctctcctggtctgaacatcataagaagctttccaacttttta
agaaccaaggcagaacctcctatatactatctgccagccaaacctcttcttgatgatcct
gcagcagttgaacagcaaagagaacaggcttttattaaatggaagactgcaagaagggct
gagctttcagactaccaaaagcagatcgaggagcaatttctatcaaacgtggagaaacaa
cttgaaaggtggcagaatgctaggaataacaggagagctgacagcctggtgaatctacag
gagacaatggacaaggagctggaaacacatcaactggagcatggtccaaagacacggagg
attgccggaggcaatgacgacgaagaggatgtggaggatatagctgccgaagatgagtta
atggatgaggttctcggggcacatgaccaggaaaggattgatgcggatgcaacaaagatt
tctgacgttgataatggcaattga

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