Zingiber officinale (ginger): 122007005
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Entry
122007005 CDS
T08725
Name
(RefSeq) pinin-like
KO
K13114
pinin
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122007005
03015 mRNA surveillance pathway
122007005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122007005
03041 Spliceosome [BR:
zof03041
]
122007005
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122007005
Spliceosome [BR:
zof03041
]
Complex C
Other components
EJC/TREX
122007005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
RSB_motif
Motif
Other DBs
NCBI-GeneID:
122007005
NCBI-ProteinID:
XP_042418676
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Position
7B:114368001..114388452
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AA seq
407 aa
AA seq
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MASSAAEKTADELRKEIQELHRRQREITERLRDPRGIRRGGLAQGSAAGPRNRGVVRPAV
DAEDQPPQKRRLSSAIVKLEDGEIKEDAGAAEGGNTEDPLSRGGIAANMDRNDQNMSYPQ
SNVGGFRRDGGSRMRRMDIDMALPEPTPREPKLIQDASLIKRNKRMLGQLLGTLEKFREE
DEKLSSTEAYMRRSDLLKRAEEKAREESEKLRQQEREQIAEKRKRDLTLRARVAAKAQEK
KWELMFLSWSEHHKKLSNFLRTKAEPPIYYLPAKPLLDDPAAVEQQREQAFIKWKTARRA
ELSDYQKQIEEQFLSNVEKQLERWQNARNNRRADSLVNLQETMDKELETHQLEHGPKTRR
IAGGNDDEEDVEDIAAEDELMDEVLGAHDQERIDADATKISDVDNGN
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggctagcagcgccgctgagaagacggcggacgagctccgtaaggagattcaagaactc
catcgacgacagagggagatcacggagcggctccgagatccaagaggcatccgccgtggt
ggcctggctcaaggaagcgcagcaggaccccgcaaccgcggtgtcgttcgacctgcggtt
gatgcggaggaccagccaccgcaaaagagacgcctgtcttctgccatcgtgaaattggag
gatggagagatcaaagaagatgcaggcgcagcagagggtggcaacacagaagatcctctt
tccaggggtggtattgctgccaacatggataggaatgatcagaatatgtcttatccacag
agcaatgttggtgggtttagaagggatggtggttctaggatgcggaggatggatattgat
atggcattacctgagccaacaccaagagagcccaaattaattcaggatgctagcttgata
aagaggaataaaagaatgctgggtcaactattagggacgctggagaaatttcgtgaagag
gacgagaaattatcatcaacagaagcatatatgcgtagatcagatttattgaaaagggca
gaagaaaaggctcgagaagaaagtgaaaaattaaggcaacaagagcgagagcaaattgct
gagaaacggaaacgtgatctgactcttcgagctcgtgttgctgctaaggcacaagagaag
aagtgggagttaatgtttctctcctggtctgaacatcataagaagctttccaacttttta
agaaccaaggcagaacctcctatatactatctgccagccaaacctcttcttgatgatcct
gcagcagttgaacagcaaagagaacaggcttttattaaatggaagactgcaagaagggct
gagctttcagactaccaaaagcagatcgaggagcaatttctatcaaacgtggagaaacaa
cttgaaaggtggcagaatgctaggaataacaggagagctgacagcctggtgaatctacag
gagacaatggacaaggagctggaaacacatcaactggagcatggtccaaagacacggagg
attgccggaggcaatgacgacgaagaggatgtggaggatatagctgccgaagatgagtta
atggatgaggttctcggggcacatgaccaggaaaggattgatgcggatgcaacaaagatt
tctgacgttgataatggcaattga
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