Zingiber officinale (ginger): 122007120
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Entry
122007120 CDS
T08725
Name
(RefSeq) DNA repair protein XRCC4-like isoform X1
KO
K10886
DNA-repair protein XRCC4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
122007120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
122007120
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
122007120
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Ortholog
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GFIT
Motif
Pfam:
XRCC4
XRCC4_CC
XLF
RNA_pol_I_A49
Motif
Other DBs
NCBI-GeneID:
122007120
NCBI-ProteinID:
XP_042418830
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Position
7B:complement(117040484..117056444)
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AA seq
249 aa
AA seq
DB search
MAEDHSDIASASTRNTCLRLELPVEDPKSKDAVFVKAAWFPSCFELAISDGLNAWACHAT
EAEVRLRAEQWDLSVTEYISLSEQYLGFQQPGSKYGFEDAGNGQRRLSWTFEKQGTKLEW
RWKCKPSSDNKKMTSGILDFLMDANIRLSEEVVRRARSFEILKSEADKCLEQSERFSNEK
SEFESAVYNKFVAVLNSKKAKLRELRDKLSSLEATAKAPKEEDDSTDKTESLDEASDRET
LIKEEPDEE
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggatcactccgacattgcttccgcctctacgaggaacacttgcttgaggctg
gagctccccgtggaggaccccaagagcaaggatgccgtcttcgtcaaggccgcctggttc
ccctcctgcttcgaactcgctatctccgacggcctcaacgcctgggcctgccatgcgacg
gaggcagaggtgaggcttagggcggaacagtgggacctttcggtgaccgagtacatctcc
ctttccgagcagtatcttggattccagcagccgggatccaagtatggatttgaagacgcc
ggaaacgggcagcgtaggttgtcatggacttttgagaagcaaggcactaaattggagtgg
cgatggaagtgcaaaccatcatctgacaacaagaaaatgacatcaggaattctggatttc
cttatggatgcaaacatacgcttgagtgaagaagttgttagaagggcacgttcttttgag
atattaaaatcagaagctgataaatgtttagagcaaagcgaacgtttcagtaatgagaaa
tctgaatttgaatctgcagtctacaacaagtttgtggctgtcttgaactctaagaaagcc
aaattgcgagagctaagggataagctatcgagtctggaggccactgcaaaagctccaaag
gaggaggatgattcaactgataaaactgagagccttgacgaagccagcgaccgggaaacc
ctaataaaggaggagcctgacgaagagtga
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