Zingiber officinale (ginger): 122007146
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Entry
122007146 CDS
T08725
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122007146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122007146
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122007146
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122007146
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
DUF4857
Motif
Other DBs
NCBI-GeneID:
122007146
NCBI-ProteinID:
XP_042418880
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Position
7B:117632618..117633906
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AA seq
271 aa
AA seq
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MSNEDKAAAAAAVEIRDVWADNLDAEIAMIREIVDDFPFVAMDTEFPGIAIRPLGVFKCF
ADSNYHVLRANVDLLHLIQLGLTFTNGAGLLPTSSWGRPIVWQFNFREFDVENDISNPES
IELLTKSGIDFIKNREFGVDAKRFAELLMSSGVVLNHSVSWVTFHCPYDFGYLLKILTCR
MLPETREEFHQLVKIFFPVLYDIKHLMRFSNYLHGGLNKLAEQLAVERIGISHQAGSDSL
LTARVFQKLRETYFNGAIEGYSGVMYGLDTD
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgaggacaaagccgccgccgccgccgcagtcgagatccgtgacgtttgggcc
gacaacctggacgccgagatcgctatgatccgcgagatcgtcgacgacttccccttcgtt
gccatggacacggagttccctggcatcgccatccgcccccttggcgtcttcaagtgcttc
gctgacagtaactaccatgtcctccgggccaacgtcgacctcctgcacctgatccagctc
ggccttacctttaccaatggtgcggggttactccctacctcctcctgggggcgccctatc
gtctggcagtttaacttcagggaatttgatgtggagaacgatatcagcaaccctgaatcc
atcgagctcttgaccaagtcgggcattgatttcatcaagaaccgggagtttggggtcgac
gccaagcgcttcgctgagctcctcatgtcgtctggcgttgtcctcaatcattctgttagc
tgggtgacttttcattgtccttatgactttggttacctcctaaagatcctaacctgcaga
atgctgcctgagactcgagaggagttccatcaactcgtcaagattttcttccctgtccta
tatgacatcaagcatcttatgaggttttcaaactacctccatggagggcttaacaagctt
gctgaacaattggcagtcgaaaggataggtatctctcatcaagctggttcagatagtttg
cttactgctcgggtattccaaaagcttagagagacatacttcaatggggcaattgaggga
tactcgggggtcatgtatgggcttgatactgattga
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