Zingiber officinale (ginger): 122007234
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Entry
122007234 CDS
T08725
Name
(RefSeq) chromatin-remodeling ATPase INO80-like isoform X1
KO
K11665
chromatin-remodeling ATPase INO80 [EC:5.6.2.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122007234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
zof03036
]
122007234
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
122007234
INO80 complex (yeast)
122007234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
DBINO
Helicase_C
ResIII
DEAD
HDA2-3
RPN13_C
DNA_pol_B
Motif
Other DBs
NCBI-GeneID:
122007234
NCBI-ProteinID:
XP_042418985
LinkDB
All DBs
Position
7B:complement(118849575..118867324)
Genome browser
AA seq
1546 aa
AA seq
DB search
MEPRRHHSKNGLSYSSLFNLEPLMTFRVPQGDDDFHSFGDSSHDENRSSQDQELYEQCNG
ERSPGMIRRRQRRDIQFEDIPSSTMRNDTDSNDEIDEDYENGITEEQYRAMLSEHMQRYR
TVMPKDSSAGLASTRMGMPGSKRSHGSKRRKFNSEPLVSAEEPVREMEISPGYYGADFEA
DYDGGNRYTLSMESSYLDIGEGITYRIPPTYDKLVSSLNLPNIADIIVEENYLKGPLDLR
SLAAMISTDKRFDNYDRGGLGEPQPQYESLQARLRGLPSGNSDKKFTLKICDIGLDAFSI
PEGAAGRIRRHIMSDSGTLQVYYVKVLERGDTYEIIERSLPKKIVVKKDPSEIEKEEMEK
IGKVWANMVRRDIPKHHKILTSFHKKQLADAKRFSETCQREVKLKVSRSLRFMRSAAVRT
RRLARDMLIFWKKVDKEQAELRKKEERDAAEALKREEELREAKRQQQRLNFLISQTELYS
HFMGNKSSTQPAETASVEEEEAEPPEEKSTVSDFEPGEEEDPEEAELKKEALRAAKQAVS
QQKKITNEFDNACLKFRQVDTGDQANDSIATGPSNIDLLNPSTMPVTSTVQAPEMFKGRL
KEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPSSV
LNNWADEISRFCPEFITLPYWGGIQERAVLRKNINAKRLYRKEARFHILITSYQLIIADE
KYLRRLKWQYMVLDEAQAIKSSQSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFI
MPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHGVLKPFMLRRVKKDVISEMTGK
KEITVHCNLSSRQQAFYRAIKNKISLAELFDGSRGHMNEKKINNLMNIVIQLRKVCNHPE
LFERNEGSSYFCFAEIPNSLLPSPFGGIDVHYAGNRNPILYEVPKLVHQEMLHNSGAPVP
LALCGLNRGSFGRLFDIFSPDSVYHSGVLQHNLLNETSELSGTFGFTRLLDLSPGEVTFL
AKCSLLERLLFSVIRWDRQLVEEILDLFMEKEGNDHESSHLDKQSIRTVARMLLLPAKSE
SSLLRKRFSTGSSDAPYEALVTSHQDRFIMNARLLRAIYAFIPRARSPPIHAQCSDRSFA
YQMTEEFHHPWMKKLFVGFARTSEFNGPRMPIHSHPLIEEISGSNIIEPVFQLPYRIFGS
SPPVRSFDPAKMLTDSGKLQTLDVLLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYKY
FRLDGSSTIMDRRDMVRDFQRRNDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDL
QAMDRAHRLGQTKDVSVYRLICKETVEEKILHRASQKNTVQQLVMTGGHVQGDLLKPEDV
VSLLLDDAQLEQKLKEVLPQMQPKERQKKKRLKGIRVDADGDVSLEYLTNDVPVENDLEK
ENARNRKRKLNSRKHNPSKLPNPRKTAAYVAELDEPSPSGYEEDHPPDQRPKRAKRPTKS
VNENLEPAYNSAANTAVNLNSLEYQPSSHDYHTGNYRADLQEGTPP
NT seq
4641 nt
NT seq
+upstream
nt +downstream
nt
atggagccgcgccggcaccactccaaaaacggcctctcctactccagcctcttcaacctc
gagccattgatgacctttcgtgttccgcaaggagatgatgatttccacagtttcggggat
agcagtcatgatgagaaccgaagcagccaagaccaagagctctatgagcagtgcaatgga
gagaggtctccagggatgataaggaggagacagaggcgcgatattcagtttgaggatatt
ccaagctcaaccatgaggaatgatactgacagcaatgatgaaatcgatgaagattatgaa
aatggaataacagaggagcaatacagagccatgcttagtgaacacatgcaaagatatagg
acagtgatgcctaaagactcatcggcagggttggcttccacacgtatgggaatgccaggt
tctaagcgaagtcatggtagtaaaagaaggaagttcaattctgagcctctggtttctgct
gaggaaccagtacgtgagatggaaatatcacccggatactatggagctgattttgaagct
gattatgatgggggtaataggtacactttgtccatggagtccagttatttggacattggt
gagggcatcacatatcgaattcctcccacttatgataagcttgtgagttctctgaacttg
ccaaacattgctgacattatagttgaagagaactatcttaaaggccctttagatttgagg
tctctagctgccatgatttctactgataagaggtttgacaactacgaccgaggcggattg
ggggagcctcaaccacaatatgaatctctccaggcaaggttgaggggacttccgtctgga
aattcagacaaaaaattcacgcttaagatatgtgacattggtctggatgcattctcaatt
ccagaaggtgcagctggtaggattcggcggcacattatgtcagattctggtactttacag
gtttattatgtcaaagtcttggagagaggagacacctatgagattattgaacgaagttta
ccgaagaagatagtagtgaagaaagatccatctgaaattgagaaggaagagatggagaag
atagggaaagtttgggctaatatggttagaagagatattccaaagcatcataagatattg
acgagtttccacaagaaacaacttgcagatgctaaacgcttttcagagacttgtcagaga
gaggtaaagttgaaggtcagtaggtcactcagatttatgagaagtgcggcagttcgcact
agaaggctagctagagacatgttgatattttggaagaaagtagataaggaacaggctgaa
ttaaggaagaaagaagaaagagatgctgctgaagctttgaaacgtgaggaggaacttcgc
gaagctaagagacaacagcagaggcttaactttctcatatcacagactgaactatacagc
catttcatggggaacaagtcttcgacacaacctgccgaaactgcatctgtcgaagaagaa
gaagctgaacctccagaagaaaaatcaactgtttctgatttcgaaccaggggaggaagag
gatccagaggaagctgaactaaaaaaggaagctctcagggcggctaaacaggcagtctct
caacagaaaaagattacaaatgaatttgacaatgcttgtttaaagtttcgacaagttgac
actggggatcaagcaaatgactctattgctacggggcccagtaacatagacctcctgaac
ccctccacaatgcctgtaacatcaacagtgcaagcaccagagatgtttaaagggcgtctt
aaagaatatcagttaaagggattacaatggctagttaactgttatgagcagggtttgaat
ggaattcttgctgatgaaatgggtctcggaaagacaattcaagctatggccttcttagct
catttagccgaggaaaaaaatatttggggtccttttctggtggttgcaccatcctctgtc
ttgaataattgggctgatgaaatcagtaggttttgccctgaatttataacacttccttac
tggggtggaattcaagagagagcagtacttaggaaaaacatcaatgcaaagcgtctatac
agaaaggaggcaagattccacatactaattaccagttaccagttgattatagctgatgag
aagtatttgcggcgtttgaaatggcagtatatggttttagatgaagctcaggcaataaaa
agttcacagagtattcgatggaagacattactcagctttaactgtagaaatcgcttgctc
ctgactgggacacctatacagaataacatggctgagctgtgggctcttctccattttatc
atgcctactttatttgacagccatgagcaatttaatgagtggttctctaaaggtatcgag
agccatgcagagcatggaggtactctaaatgagcatcaactcaacagactgcatggagtt
ttgaagcctttcatgttgagacgggtaaagaaagatgttatatcagagatgacagggaag
aaagaaatcacagttcactgtaatttgagttctcgacagcaggccttttatcgtgctata
aaaaacaagatatcacttgctgaactttttgatggtagccgtggccatatgaatgagaag
aaaataaataacttgatgaatattgttatacaattacggaaggtgtgtaaccatccagag
ttgtttgaacgtaatgaaggaagctcatatttttgctttgcagagataccaaattcgctt
cttccatctccatttggaggaatcgatgtacattatgcaggaaacaggaatcccatattg
tatgaggtgccaaagctggtccatcaagaaatgcttcataattctggagcacctgttcct
cttgctctctgcggtcttaaccgtggaagttttggccgactttttgatatattttctcca
gatagcgtttatcattctggagtgttacaacataacctcttaaatgagacttctgaactt
agtggaacttttgggtttacacggctgctggatttatcaccaggtgaagttaccttctta
gccaagtgttcactactcgagcggttattgttttctgtaataaggtgggataggcagttg
gtcgaggaaatcttagacttgtttatggaaaaagaaggcaatgatcacgaaagttctcac
ctggataaacaaagtattcgaactgttgcacggatgttgctgttaccagcaaaatcggag
tcaagcttacttagaaaaaggttttcaactggttctagtgatgctccatatgaggctttg
gttacttcccatcaagatcggtttataatgaatgccaggcttttgcgtgctatatatgca
tttataccacgggccagatctccacctatacatgctcaatgctctgacagaagctttgcc
taccaaatgaccgaggagtttcatcacccttggatgaagaaattgtttgttggatttgct
cggacctctgaatttaatggtcctagaatgcctattcattcccaccctttgatagaagag
atttcagggtcaaatatcattgaacccgtttttcagctcccttatagaatttttggttct
tctccacctgtgcgaagctttgatcctgctaaaatgcttacggactctgggaaacttcaa
actcttgatgtgctattgaaacgtctgcgggctgaaaatcatcgtgttcttttatttgcg
cagatgacaaaaatgttaaatatacttgaggattatatgaactacaggaaatacaagtac
ttccgattagatggatcatctactattatggaccgtcgtgacatggtgagggattttcag
cgtaggaatgatatatttgtttttctgctgagtacgagggctggaggtcttggtattaat
cttactgctgctgatactgtgatcttctatgagagtgactggaatccaacattggacttg
caagcgatggatagggcacatcggttgggacaaacaaaggacgtttctgtgtatagattg
atttgcaaagaaacggtcgaagaaaaaattttgcaccgagcgagccaaaagaatacggtg
cagcagctggtcatgacaggtggccatgttcagggtgatcttttgaagcccgaggatgta
gtatcccttctccttgacgatgcacaattggagcagaagttgaaagaagtactgccacag
atgcagcctaaggaacgacagaagaaaaaacgattgaaaggaatacgagtagacgcagat
ggtgatgtatctctggaatacttgacaaatgatgttccagtggaaaatgatttggaaaaa
gaaaatgcccgtaacagaaagagaaaactcaattctcggaagcataatccttcaaagttg
ccgaaccctcgtaaaacagcagcttatgtagctgaacttgatgaacctagtccaagtggc
tacgaggaagatcaccctcctgaccagaggccaaaaagagcaaaaagacctacaaagagt
gttaacgaaaacctcgaacctgcttacaactctgcagccaatacagcagtcaacttgaac
tccttggaataccagccgtcttcacacgactatcatactggcaactatagagctgattta
caggaaggcacaccaccttaa
DBGET
integrated database retrieval system
