Zingiber officinale (ginger): 122007292
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Entry
122007292 CDS
T08725
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122007292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122007292
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122007292
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122007292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Glyco_hydro_84_hel
Motif
Other DBs
NCBI-GeneID:
122007292
NCBI-ProteinID:
XP_042419070
LinkDB
All DBs
Position
7B:119653957..119686646
Genome browser
AA seq
2421 aa
AA seq
DB search
MLSSFVFAGQIRFLLHSVNEFNFDSTLRELFQLVECGSDGSTFLLQMCLDQILVKDGDIP
PLKKDLVSSVVRYLLDKPHFSTNLSEALSSISINESLLEDISNTLGMSVAEKIGVGLALL
DSNNPDLKMRGQNFCIAQIEELCANPSSTLHTDQIHDIVMFLYRTEGLSKHMDSFTRILS
LLQLKGRSFFLSAPLLTNESNVVNNFRHLELFSGCFDNDFDAALAEIEKEISMADIVAEL
GYGCTIDISHCKEILSQFQPLNEETISKLIGIIACNHSNLEDPLNVHATFCSALGSCFAS
DSSLLNTWNVNVLVETIKEIAPKTNWALVMENLDHEGFVIPDETAFSLLMSIYKSACQDP
FPLHAICGSAWKNAEGQLSFLRYAVSAPPEVFTFKHCSRQLTIADLEHLKNGNQAWFCLD
LLEILCQLAESGHASLVRVILDYPLSQYPEVLLIGVAHISTTYNLIQYEVSSTLFHVILQ
DPSKSSILAHLWKINPNLVLRGFIESLIDPKILFRIVDLCDDLKILSSVLVATPFPFSIR
LAAVASRKDHINLENWLNEYLTAYKDVFFEDCLTFLKEALGDAIADIPDVSLPESRSAIL
NEYHETCSIFLKVLQAHSGQFISNQHFEEIKKLHVSSNPRIPTVEPLVPTVSEGVSDDID
AEVNTYFHQMFSGQLTIDAMIQMLARFKESSDPRQQKILDCIIHNLFDEYKFFPKYPDRQ
LKIVAVLFGSLIKHQLVTDIALGIALRGVIHALRKSVDSKMFMFGANALEQFTDRLVEWP
AYCNHILQISHLRGTHAELVSFIERALTRISSSQSESNSGNPISIDQQSSGAPSTETMEA
SESSWHMMGSASIHLGHQFSSLQLQQRHQGFLGEKSKASAMSATHTKPPSSHTGQSSFLS
GSSESVANQKITSHHSVATPASVTSSPNFLRARGTTASGMLRQPSYNTGFGAALNIETLV
AAAERRDTPIEVPPSEIQDKIFFMINNISTSNMEGKAKEFSEVLKEQYYPWFAQYMVMKR
ASIEPNFHDLYLKFLEKVNSKILNKEIVKATYENCKVLLRSDLIKSSSEERSLLKNLGSW
LGKFTIGRNQALRAKEIDPKELIIEAYEKGLMIAVIPFTSKILEPCHSSLAYQPPNPWTM
GILSLLTEIYNLPNLKMNLKFDIEVLFKNLSVDMKEVKPTTLLIDKIREVEGNPDFSNKD
ITAAHPPLVEINSGLLPPLSHVELQTEVNSSSHPAGHPNAMAQYTSAPHITSGSILEEDR
IGIVNGPELVSSVQGLTEVTPSPSPSPSPSPSPSPSPSPFSLNQLLTIIPNSESYININP
KLSSMGSNMQFHRIIQLAMDKAIREIVSPVIQRSVTIASRTTKELVLKDYSMETDDGVIS
RSAHLMVGTLAGSLAHVTCKEPLRVALSSNLRGLLQALNVANDHVEQIVQILTTDHLDLG
CAVIENVASEKAVELIDGEMAPAFAASRKQREASGSAYFDTLSYAQGPLSRIPEALRPKP
GRLSIPQQRVYDDFIKNIWQNQSGQNSTTSSLGLSSLGSSVGNSSLSRVYGASSGNISSN
VYVTSQVAPVSMTQPFDLTLEESDRGSVQLPSVSPIYGADDSLMQHGVEVSSMVASVTSA
DLHMVDPAVATKDSTNVLASSSSPGMDRLGAVLPESLLSTGEALEKYLQVAQKLEAMITA
DARDTEIQEAVAEIPEIILKCESRDEASLAIAQKVFKSLYENASNTLHIASHLAILAAIR
DVCKLVVKELTSWVIYSDEERKFNKDITVGLIRSELLNLAEYNVHLAKLIGGGRNKPATE
FAISLVQTLATQEPGVSMSELYNLIEALSKLAMKPGSPESLQQLVEIAKSNANSPLSLNK
EEKIRQFKDKKGLSGVSLTNREELDSNEPSPADPAGFYEQIATYFTDWCRICELPTTNES
TYSHYISQLQQNGLLKGDDITDRFFRVFTELAVTYCKVVHEQPQLLSFFSIDSYAKFVVL
VLKYCSMDQGSTKSLLLPKILSVTVRTIQKDAEEKKLSFNPRPYFRLFINWLLDLITPDT
VDSVNFQVLTSFANAFHALQPLKVPGWSFAWLELVSHRSFMPKLLTCNGAKGWPFFQRLL
VDLLKFMEPYLRNVELSEPVQLLYKGTLRVLLVLLHDFPDFLCDYHFSFCDVIPSSCIQM
RNVILSAFPRNMRLPDPSTPNLKIDLLPEISQPPRILSDVDSILKAKQIKADIDEYLKTS
EVSSFISELIPKLLLSQSEANLAGTPYNVPLINSLVLYIGMQATQLLQNKSTASTQQVNH
NGPLDLFLVSTPREIFHSLINNLDSEGRYLLLNAIANQLRYPNNHTHYFSFVLLYLFAES
KQDSSIQEQITRVLLERMIVNRPHPWGLLITFIELIRNQRYDFWNCSFTRCSPEIEKLFE
SVSRTCVGPKTMSDAMVSGSI
NT seq
7266 nt
NT seq
+upstream
nt +downstream
nt
atgctttcctccttcgtcttcgccggtcagatccggttcctgctgcacagcgtgaacgag
ttcaacttcgactccaccctccgggaactcttccagctcgtggagtgtggaagtgatggc
agcaccttcttgcttcagatgtgtttggatcaaattttagttaaagatggagatattcct
ccgctgaaaaaagatttggtttcttctgttgtgagatatttgctagacaaaccacatttc
agtacaaacctttctgaagctttgagtagcatttcgataaatgaaagtctccttgaagat
atttcaaacacactgggtatgtcagtggctgagaaaataggcgttgggcttgctttattg
gactctaataatccagatttaaagatgagaggtcaaaatttttgtattgctcaaattgag
gaattatgtgcaaatccttcctccactttgcacacagaccaaattcatgatattgtcatg
tttctctatcgaactgaagggctttcaaagcacatggattcttttactagaattctatct
cttcttcaactgaaagggagatcttttttcttgtcagccccgttgctgacaaatgagagc
aatgtcgtcaacaatttcaggcatttggaattattctctggatgttttgacaatgatttt
gatgctgcattagctgaaattgaaaaggagattagcatggctgacatagtggcagaattg
ggctatggatgcacaattgacatttctcattgtaaagagatactgtctcaattccaacca
ctcaacgaagagacaatttcaaagttaatagggataattgcctgcaatcattccaatctt
gaagatcctctaaatgttcatgcaactttctgttcagctctcggtagctgctttgctagt
gattcttcactattgaacacgtggaatgttaatgttcttgttgaaacaattaaggaaatt
gctccaaagacaaattgggcacttgtcatggaaaaccttgaccatgagggctttgtgatt
ccggatgaaactgcattttcacttttaatgtccatatataaaagtgcatgtcaggatcct
ttcccactccatgctatttgcggctctgcttggaagaatgctgaagggcagctttctttt
ttgagatatgctgtgtcagctcctcctgaagttttcacattcaaacactgttcaaggcag
ctgacaattgctgatctagagcatctcaagaatggaaatcaggcatggttttgtctagat
ctgttggagattttatgccagcttgccgaaagtggccatgctagtttggtcagggtcata
ttagattaccctcttagtcagtatcctgaggttttacttattggagttgctcacatcagt
actacttacaatctcatccagtatgaagtatcttctacattatttcatgtgattctacaa
gatccctcaaaaagcagcatacttgctcatctatggaaaataaatcccaacctagttctt
cgaggattcatagaaagcttgattgatcccaagattttatttaggattgtggatctatgt
gatgatctgaagattttatcatctgttctggtcgcaactccttttccttttagcattaga
ttggctgctgttgcttccaggaaagatcacattaatctcgagaattggttgaatgaatat
ttgactgcatataaagatgttttttttgaggattgtctgacgtttctaaaagaagcactc
ggtgatgcaatagctgatatcccagatgtctctcttccagagtctcgatcagctattttg
aatgaatatcatgaaacatgttcaatattcttaaaggttctccaggcacattctggacag
tttatttctaaccagcattttgaggaaataaagaaactgcatgtatcatctaatccaagg
attccaactgttgaaccattggttccgacagtttcagagggtgtttcagatgatatagat
gcagaggtgaatacctatttccatcagatgttctctggacagttgaccattgatgctatg
attcagatgcttgcacgtttcaaagaatcttctgatccaaggcagcagaagatcttggac
tgtatcattcacaatctatttgatgagtacaagttcttccccaagtatcccgacaggcaa
ctaaagatagttgcagtgctcttcggttctttaataaagcaccaactggtgacagatatt
gcgcttggtatcgctttacgtggggttatccatgcgttgcgtaaatctgttgattccaaa
atgtttatgtttggtgccaatgcattagagcagtttacagatcgtctagttgagtggccc
gcctattgcaatcacatattacagatatctcatttgcgtggtacacatgctgaattggtt
tcattcattgaacgagcgctcacgaggatttcctctagccagtcagagtcaaatagtggt
aacccaattagcattgatcaacaaagctctggagcaccttctactgaaaccatggaggca
tctgagtcatcatggcacatgatgggttcagcttctatccacctgggccaccagttttcc
tctttgcagttgcagcagaggcatcagggttttcttggtgaaaagagcaaagcttctgcc
atgtctgccactcatacaaagcctccttcatcacatactgggcaatcttcatttctttct
ggatcgtcagaatcagttgctaaccagaagatcacatctcatcattctgttgccacacca
gcttctgttacatcatccccaaatttccttcgtgctcggggcactacagcttctggcatg
cttcggcaaccttcttacaacacaggttttggggctgcattaaacattgaaacacttgtt
gctgcagctgagaggagagatacaccaattgaggttcctccatcagaaatccaagacaag
atatttttcatgatcaacaacatttcaacttcaaacatggaaggaaaagctaaagagttc
agtgaggttctcaaggagcaatattatccttggtttgcacagtacatggtgatgaaaagg
gcaagcattgaaccaaattttcacgacttgtacctaaaattcttggagaaagttaactca
aaaatcttaaataaggagatagtgaaagctacgtatgagaactgcaaggtgttgctaaga
tctgatcttattaaatccagttctgaagaacgatcacttcttaaaaatcttggtagttgg
cttgggaaatttaccattggtaggaatcaagcattgcgtgcaaaagaaattgatcccaaa
gaattgattatagaggcttatgagaaaggtctgatgattgctgtaatcccatttacctca
aagattctggagccatgccattccagtttagcttatcaacctcccaacccttggactatg
gggattctaagtttgcttactgagatctataatcttccaaacctcaaaatgaacctgaaa
tttgatatagaggttttatttaagaatcttagtgtagatatgaaagaagttaaaccaaca
actctattgatagacaagattcgtgaagtagagggtaatccagatttttcgaataaggac
ataactgcagctcatccaccacttgttgaaattaattcaggattattgcctccattgagt
catgtagaattgcaaactgaagtcaatagttcatctcatccggcaggccatccaaatgca
atggctcaatatacttctgcaccacatatcacttcaggttccattttggaagaagacaga
attggaattgtaaacggacctgaactagtttcatccgttcagggattgactgaagttact
ccatcaccttccccttccccttccccttccccttcaccttcaccttcaccttcacctttt
tctctgaatcagcttttgacaataattccaaattctgagtcatatatcaatattaatcca
aagcttagttctatggggtcaaacatgcagttccacagaattattcaactggcaatggat
aaggccataagagaaattgtatctcctgttattcaacgaagtgttacaattgctagtagg
acaacaaaagaacttgttttgaaggattattccatggaaactgatgatggtgtcatatct
cgttctgcccatctaatggttggaactctagctggaagcttggctcatgtgacgtgcaag
gaaccccttcgtgtagccctttcaagcaatttaagaggtcttcttcaagctttgaacgtg
gcaaatgatcatgttgaacaaatagttcagatcctcacaactgatcatcttgatcttggt
tgcgctgtaattgagaatgtagcatcagagaaggctgttgaattgattgatggagagatg
gcccctgcatttgctgcctcgaggaaacagagggaagcatctggatctgcatattttgat
accctttcttatgcacaagggccactttcacgaatcccagaggcacttcgtccaaaacct
ggtcgcctttccattccacaacagcgagtctatgatgattttatcaagaatatttggcaa
aatcagtctggtcagaattcaactacttcatctcttggcctttctagtttaggcagttct
gtgggtaattcttcactgtcacgtgtgtatggtgcaagttctggtaacattagttccaat
gtctatgtcacttcgcaagtagctcctgttagcatgacacaacccttcgaccttaccttg
gaagagtcagatcgtggttcggtacaacttcctagtgtctccccaatttatggtgctgat
gatagtctcatgcaacatggggttgaagttagttctatggtagcttctgttacttctgct
gatctacacatggttgatccagcagttgcaaccaaagattcgacaaatgtcttagcatca
tcttcttcacctggtatggaccgtcttggagctgttttacctgaatcattgctgagcact
ggggaggctttggagaaatacctgcaagttgctcaaaagttggaagcgatgattactgct
gatgccagagacacggaaattcaggaagcagttgctgaaattccagaaatcatattgaaa
tgtgaaagtagagatgaagcctcattagctatagcccaaaaggttttcaagagcttgtat
gaaaatgcatcaaacactctccatattgcttcacatctagcaattctagcagccatacga
gatgtttgcaaacttgttgtcaaagaattgacaagctgggtaatttactctgatgaggaa
cggaaattcaacaaagacataactgtgggccttattcgttctgagttactcaaccttgcc
gagtacaatgtccatttggctaaacttataggcggggggagaaataagcctgcaactgag
tttgccatatcccttgtgcaaactttggctactcaggaacctggtgtaagcatgtcagag
ctatataatctcattgaagctttgtcaaagttggctatgaagcctgggtcaccagagtca
ttgcaacaattagtggagattgctaagagtaatgcaaattctcctttatctttgaacaaa
gaagagaagatcaggcaattcaaggataagaagggtctttctggagtttccttgacaaac
agggaggagcttgattctaatgaaccatcacctgctgatcctgctggtttctatgagcag
attgctacctactttactgattggtgccgaatttgtgaacttcccacaacaaatgaatca
acctacagtcattatatttcccagctgcagcagaatggtttgttaaagggtgatgatatc
acagaccgtttttttcgcgtgttcacggagttagctgtcacttattgtaaagttgtgcat
gaacaaccacagttgctatcttttttctcaattgattcatatgcgaagtttgtggttctt
gtgttaaagtactgttctatggatcagggatcaactaaatctcttctgcttccgaagatt
ttatctgttactgtaagaaccatccaaaaggatgcagaagagaaaaaactttccttcaac
ccaagaccatatttcagattgtttatcaattggcttttggatctaattacccccgacaca
gttgatagtgtcaactttcaggtgttgacatcttttgcaaatgctttccatgcattgcag
cccttaaaagttcctggttggagctttgcatggcttgagttggtgagtcacagaagcttc
atgccaaaactactcacgtgcaatggtgccaagggttggccattcttccagcgcttgctt
gttgatctactcaagttcatggagccatatttaagaaatgtggaactttcggaaccggtg
caactgttatataaagggactcttagagtgcttcttgttctgctccatgattttcctgac
ttcctctgtgattatcactttagtttctgtgatgtgattccttcaagttgcatccaaatg
cgaaatgtcattctaagtgctttcccacgaaatatgcggcttcctgatccatcaactccc
aacttaaagatcgatttgcttccagaaattagccaaccccctcgtattctttctgatgta
gatagtattttaaaagcaaaacaaatcaaagctgatattgatgagtaccttaagacatct
gaagtatcctcattcataagcgaactgattccgaaattacttctttctcaaagcgaagca
aacttggctgggactccttataatgtaccattgatcaactcacttgttctttacataggg
atgcaggctacacaattactgcagaacaagtctactgcatccacccaacaagtgaatcac
aatggtccattggatcttttcctagttagcacgcctagggagatctttcatagtttaata
aataacctggactcagaaggacgttacctcttactaaatgcaatcgctaatcaactgcga
taccctaacaaccacactcattacttttcttttgtcctgctgtacttattcgctgagtcc
aaacaggacagcagcatacaggagcaaataactcgagtgctgttggagcgaatgattgtt
aatcgtccccatccctggggcttactcatcactttcatcgaactgatcaggaaccagcgg
tatgacttttggaattgttcattcacaagatgctctccagagattgaaaagttgtttgaa
tccgtgtcgaggacctgtgtcggccccaaaactatgagcgacgcaatggtatcgggtagt
atctga
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integrated database retrieval system
