Zingiber officinale (ginger): 122008114
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Entry
122008114 CDS
T08725
Name
(RefSeq) protein CHROMATIN REMODELING 35-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122008114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
122008114
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
122008114
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
A2L_zn_ribbon
Zuotin_N
Motif
Other DBs
NCBI-GeneID:
122008114
NCBI-ProteinID:
XP_042419655
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All DBs
Position
8A:complement(26239306..26254851)
Genome browser
AA seq
986 aa
AA seq
DB search
MDSMDLEANKRRKINNEDCNSFNSNPTTPNYGKVGNSNHFDYSKDFSFTNLLERMDGDKY
GSVTKEFEAMHAHRIQMMNALSSLRPSPKPTITPQGSTNVYSDNHTVIDLDDDTISDAVN
PLDSLPPNGQPKENKAIVILDSDDEDASPAVGNKQSLRPADNISLLSASLASEIEKHILK
ASKLAQEASSYQLVQYDQGSHRPYITAAFKPIKQPSIQFEKVVLQTVDENQRLQNVVDET
SVKINNEKQDLIKSKKGIDRKCSSKRKKRSEIQDADASNSIKSIVPYAELKQHNDDSEYV
SAETLQEKIHNRSFNEDEKVLSESDGLEDLWKDMSLAMEFTKDDASDDQVVLEEVEEEEE
CGHSYLLQDDFGLVCRICGVIQKSIDTIFDYQWTKGSHSIRTYLSGQKNSKGLDEEIQFS
GIKVSEDEFIDAEVSIHPRHLKQMKPHQLEGFNFLVKNLITDKPGGCILAHAPGSGKTFM
LISFIQSFLAKYPSKKPMVVLPKGILPIWKKELQLWQVEDLPVIDLYSSKAENRSQQLGV
LKVWQETNKSILFLGYKQFTNIVSDKENSKASAACREILLKVPGLLILDEGHTPRNEETY
MLDSLAKVQTPRKVVLSGTLFQNHVREVFNILNLVRPKFLKMEHSRAIVKRVLSRVHISS
GRKLSKMDNAFCELVEETLQNDDNFKRKVTVIQDLRELTKHVLHYYKGDFLEELPGLVDF
TVMLNLNAKQKQMIERLPKSDKFRRTSLASAIYMHPQLYEAAEKDPGDRAASLNDYSAKF
DSLLDSISFRDGIKTKFFLNILSLAESVGEKLLCFSHYLLPLKFLERLIVKTKGWHTGKE
IFMISGDSSSEERERSMEQFNNSVDAKVFFGSIKACGEGISLVGASRIVILDVHLNPSVT
RQAIGRAFRPGQLKKVYTYRLVGADSPEEEDHRTSFRKELISKMWFEWSEYRGLDFELDE
VDPTSCDDEFLECRLVGEDIKTVYRR
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atggacagtatggatcttgaggctaataagaggaggaagatcaacaatgaggattgcaac
agtttcaattctaacccaactactcccaactatggaaaggttgggaattctaaccatttt
gactattcaaaagatttcagttttaccaaccttctggaaaggatggatggagacaagtat
gggagcgtaactaaagaatttgaagccatgcatgctcatcgtatccaaatgatgaatgca
ctatcctcattgcgtccaagtcctaagcccaccataactcctcagggcagcacaaatgtt
tactcagataatcatactgtaattgatctggatgatgacaccatttcagatgcagttaac
cccttggattctcttccacctaatggtcagccgaaagagaacaaggcaattgtaatttta
gattcagatgatgaagatgccagtcctgcagttggaaataaacaatctcttcggcctgct
gataacatatcgttgttaagtgcatccttggcaagtgaaatagagaagcatatactaaaa
gctagcaaattagcacaagaggctagctcatatcaattagtccagtatgaccaaggatct
cacaggccttatattactgctgcttttaagccaatcaaacaaccctctattcaattcgaa
aaggtggttctacagacagttgatgaaaatcaacggctgcaaaatgttgttgatgaaaca
agtgtaaagataaacaatgaaaaacaagatctaatcaaatcaaaaaaggggattgacagg
aaatgttcatccaaaagaaagaaaagaagtgagatacaagatgctgatgcttctaatagt
ataaagagtattgttccatatgctgaactgaaacaacacaatgatgattctgaatatgtt
tctgccgagactctgcaagagaagatacacaacaggagcttcaatgaagatgaaaaagta
ttgtcagaaagtgatggcttggaagatctctggaaagatatgtcattagcaatggagttt
acgaaggatgatgcttctgacgatcaagttgtgctagaagaagtagaagaagaagaagaa
tgtggtcattcctacttgctccaagatgactttggccttgtttgccgtatttgtggagta
atacagaaaagcatagatactatatttgactaccaatggacaaagggttcacattcaatt
cggacatacttgtctggacaaaagaactccaagggtctagatgaagaaattcagttctct
ggaatcaaagtgtcagaagatgagttcattgatgctgaagtatctatccatcccaggcat
ctgaagcaaatgaagccacatcaactggaaggcttcaatttcttggttaagaacttgatt
acagataaaccaggaggatgtattctagctcatgcacctggttctgggaaaacctttatg
cttataagcttcatccagagttttttagccaagtacccttccaaaaagcccatggttgtt
ttgcccaaaggaattttgcccatttggaaaaaggagctacaactgtggcaggttgaagat
ttgcctgtcattgatttatactccagtaaggctgagaataggtcgcagcagttgggagtt
ctaaaagtttggcaagagacaaataaaagtattctctttttaggctataaacagttcact
aacattgtttctgataaagaaaacagcaaagcatctgctgcatgtcgggaaatacttctg
aaagtccctggccttctgatattagatgaaggccacactccaagaaatgaagagacttac
atgctagattcacttgcgaaggtgcagaccccccgaaaagtagtactttcaggaacctta
ttccagaatcatgtcagggaggtcttcaacattttgaatctggtgcgccctaaatttctg
aaaatggagcattctcgagccattgtcaagcgggttctaagcagagtgcacatatcaagt
ggcaggaagctctctaaaatggataatgctttctgtgaactggttgaggagacactgcag
aatgatgacaattttaaaagaaaagtgactgtgattcaagaccttcgtgagttaaccaag
catgtccttcactattacaagggtgattttttggaggagctgcctggtcttgttgatttc
actgttatgttgaacctcaatgccaagcaaaaacagatgattgaaaggctcccaaagtct
gacaagttcagaagaacctccttggccagtgctatctatatgcatcctcaactgtatgaa
gcagcagaaaaggatcctggagacagagctgcctcattaaatgattacagtgctaagttt
gatagcttgctagattcaataagttttcgagatggcatcaaaactaagttttttctgaat
atcctgtctcttgctgagtctgtgggagagaagctactttgctttagtcactaccttctg
cctttaaaatttttggaaaggctgatagttaagaccaagggttggcatactggaaaagaa
attttcatgattagcggtgactcatcatctgaggaacgagagaggtcgatggaacaattt
aacaattctgttgatgccaaggttttctttggttcaatcaaggcttgtggagagggcata
tcacttgtaggtgcatcaaggattgtgattttggatgtgcacttaaatccgtcagtaact
cgtcaagctattggtcgtgcatttcggccaggccaactgaagaaagtatacacatacaga
ttggtcggcgctgattctccagaggaggaagatcatcgtacctcctttagaaaggagtta
atttcaaaaatgtggttcgagtggtctgagtaccgtggcctggactttgagttggatgag
gtcgatcctaccagttgtgatgatgagtttcttgaatgccgtcttgtaggagaagatatc
aaaacagtgtacagaaggtaa
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