Zingiber officinale (ginger): 122008168
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Entry
122008168 CDS
T08725
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122008168
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zof01009
]
122008168
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122008168
03036 Chromosome and associated proteins [BR:
zof03036
]
122008168
Protein phosphatases and associated proteins [BR:
zof01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
122008168
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
122008168
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
122008168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
ComGF
Motif
Other DBs
NCBI-GeneID:
122008168
NCBI-ProteinID:
XP_042419719
LinkDB
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Position
8A:27651805..27672691
Genome browser
AA seq
513 aa
AA seq
DB search
MKGSGDVVAGTTTAEAPLPTQLDWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATG
DRGGRVVLFERTDVRNHASRKDLEMDGDPISRHPEFHYKTEFQSHEPEFDYLKSLEIEEK
INKIKWCQTTNNSLFLLSTNDKTIKCWKVQEKKVKKIAEMNIHASENGSIASSSTTTSTS
YLPNGACAVIPHNHLSTDLSYPSGCSASLRLPVVVTSQDTCLIARCRRIYAHAHDYHINS
ISNNSDGETFISADDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML
AYSSSKGSIRLIDLRQSALCDNHSKILDEREAPGSRSFFTEIITSISDIKFAKDGRYLLS
RDYMTLKLWDINMESSPVSTFQVHEYLRPKLCDLYENDSIFDKFDCCLSGDGLRVATGSY
SNLFRVFGCVPGSDEATTLEASKNPMRLQVQALPKPARSLGNLTRVVRRGSESPSDVNGN
SCDFTSKLLHLAWHPTENSIACAAMNSLYMYYA
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgaaggggagcggcgatgtcgtcgccgggacgacgacggcggaggcgcccctgcctacg
cagctagactggaaattctcgcaggtgttcggggagcggacggcgggcgaggaggtccag
gaagtcgatattatttcagccattgaatttgacaagtctggtgatcatcttgccactgga
gatcgaggaggacgtgttgttttgtttgagaggactgatgttagaaatcatgcttcacgg
aaggatttggagatggatggcgatccaattagtaggcaccctgagtttcactacaaaact
gagttccaaagccacgagcctgagtttgactatcttaaaagcttggaaatagaggagaag
attaacaaaatcaagtggtgtcagacaaccaataattctctttttcttctttctaccaat
gacaagacaattaagtgctggaaggtgcaagaaaagaaagtgaagaagattgctgagatg
aatatacacgcttcagaaaatgggagcattgcgagctcaagtacaactacttccacgagt
tacttgccaaatggtgcttgtgctgtaataccccacaatcacttgagcaccgacctctct
tacccctctggatgttctgcatcactacgtctgccagtggtagtgacaagccaagataca
tgtcttattgccagatgtagaaggatctatgctcatgctcatgattatcacattaattcc
atctctaataacagtgatggcgagacattcatatcagctgatgatctgcgaataaatctt
tggaatttggagatcagcagtcaaagctttaatattgttgatgtgaaacctgcaaacatg
gaggatttaactgaggtgataacatctgctgagtttcatccaacccattgtaacatgctg
gcatatagtagttcaaagggctcaatccggctcatagacttgcggcagtccgccttatgt
gataaccattccaagatattggatgaacgtgaagcacctggttcacggtcatttttcaca
gagattattacatcaatttcagatattaaatttgcaaaagatggaagatatctccttagt
cgagattatatgacccttaagctatgggacataaacatggagtctagtcctgtttcaact
tttcaagtccatgagtatttaaggcctaagctttgtgatctctatgaaaatgattcaatc
tttgataaatttgattgctgtctcagtggtgatgggttgcgtgttgcaactgggagttac
agcaatctttttcgtgtatttggttgtgttcctggcagcgatgaagcaaccactttggag
gccagtaaaaatccaatgaggctgcaagtgcaagctcttccaaaacctgcaaggtctcta
ggcaatttgacacgagttgtcagacgaggttcagaaagcccttcagatgtgaatggaaat
tcatgtgattttacaagcaaattactccatttagcatggcaccctacagaaaattctatt
gcgtgtgctgcaatgaacagcttgtacatgtactatgcatga
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