Zingiber officinale (ginger): 122008351
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Entry
122008351 CDS
T08725
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03030
DNA replication
zof03420
Nucleotide excision repair
zof03430
Mismatch repair
zof03440
Homologous recombination
zof03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122008351
03420 Nucleotide excision repair
122008351
03430 Mismatch repair
122008351
03440 Homologous recombination
122008351
03460 Fanconi anemia pathway
122008351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zof03000
]
122008351
03032 DNA replication proteins [BR:
zof03032
]
122008351
03400 DNA repair and recombination proteins [BR:
zof03400
]
122008351
Transcription factors [BR:
zof03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
122008351
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
122008351
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
122008351
MMR (mismatch excision repair)
122008351
DSBR (double strand breaks repair)
HR (homologous recombination)
122008351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
zf-CCHC_3
CDC24_OB3
DUF223
zf-CCHC_2
zf-CCHC_6
Motif
Other DBs
NCBI-GeneID:
122008351
NCBI-ProteinID:
XP_042420001
LinkDB
All DBs
Position
8A:complement(32586525..32590424)
Genome browser
AA seq
871 aa
AA seq
DB search
MTAVDLTRGAIAAVSEGRAEEGAKPVVQVWDLRLVNTQQNTTERYRMLLSDGAHIQQAML
ATQMNGLVKSGTLQKYSIVQLNEFICNVIQNRTIIIVINLEVLISNSSAIGEPKMYENGA
ATQIRAPLPGQSLGPDHPVTAAANPQTHGMRSSTPITGYNVSGGASLHPKTDPMANSPSI
GANYGSSPVLGRNMSGGKTDTEHPKAEQGIGRFSESHSYGSNQNQRSDPTSAGPFRPPAS
SYGRPPPQQPPPMYSNRGPIARNEAPARIIPIAALNPYQGRWTIKARVTAKGDLRRYNNP
RGEGKVFSFDLLDSDGGEVRCTCFNAVADQFYDQIEVGKVYLISKGSLKPAQKNFNHLNN
EYEIFIESQSVIQPCLEEDSTIPKQQFNFRPINEIEGLENNSTIDIIGIVTSINPLVSIM
RKNGTETNKQTLQLKDMSGRSVEVTLWGNFCSTEGKQLQSMCDSGVNPILAIKAGRVSDF
SGKSINTINSSQLFINPDFTEAHRLREWYNREGKTMTAPSISRDTATMGRTDVRKTVAQI
KDEGLGRSEKPDWITVKATVTFIKVDNFCYTACPLLVGDRPCNKKVNNNGDGKWHCDRCD
QSFPECDYRYLLQFQIQDHTGMTWVTAFQECGEEILGVTAKELYLLKYEEQDDLKFAEII
RTVIFHQYVFKLKVKEETFSDEQRVKSTVVKAERVNPSSESRYLLGLIERLSTEDPNAST
AVPGTFAPTSGIPNSSYDPVELNCNIYSANNNYSAFHNADGYRTGAPTNQSVQYANDYGG
TIKQSFSRNEAQLQCNNCGGQGHSFQNCPISTSRPAQSVGGGYSSAGANVCFKCHQPGHW
ASECPGVGAVTSAYRGSGTSGRFTRQNIGGF
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgactgcggtcgatctgacgcggggggcgatcgcggcggtatcggaggggcgtgcggag
gagggcgccaagccggtggtgcaggtttgggatttgaggctcgtgaacacccaacagaac
acgacggagaggtaccggatgttgctgtccgatggggctcatatacagcaggccatgctc
gcgacgcaaatgaatggtctcgtcaagtcggggacgctccagaagtactccatcgtccag
ctcaatgagttcatctgcaacgtcatccagaaccgcacaatcatcattgtcatcaacctg
gaagtccttatcagtaatagcagcgctataggagaacccaaaatgtatgaaaatggcgct
gctacacaaatccgtgctccactgcctggtcagtcgctgggtccagatcatccagttaca
gctgcagctaatccccaaactcatggtatgcgctcctctactcccatcaccgggtacaat
gtttctggtggagcttctttgcatccgaagactgatcctatggcaaatagcccatctatc
ggtgctaattatggcagcagtcctgtgttgggcaggaatatgagtggtgggaaaactgat
actgaacacccaaaagctgaacagggtatagggcggttctctgagtcacattcatatggt
agtaaccagaaccagaggtctgatccaacatcagccggaccatttcgtccccctgccagt
tcttatgggcgtcctcctcctcagcagcccccgccaatgtactcaaatagggggcctata
gccagaaatgaagctcctgctcgaattatcccaattgctgctttgaatccttaccagggt
agatggacaattaaggcaagagtgacagccaagggtgaccttaggcgctataataatcct
agaggagaaggaaaagtcttctcgtttgatctgctggattctgacggtggagaagtacgt
tgcacttgctttaatgccgtagctgatcagttctatgatcagattgaggttgggaaagtt
tacctgatttctaaaggtagtttgaagcctgcacagaagaactttaatcatctgaacaat
gaatatgaaatctttatagaatctcaatcagttattcagccttgtttagaggaagattct
accattccaaagcaacagttcaactttcgtccgataaatgaaattgaaggcttggaaaac
aattcaacgatcgatatcattggcattgtgacttcaattaatcctttggtttccattatg
aggaaaaatggcacagaaactaataagcaaactcttcagttgaaggacatgtctggccgt
agtgttgaggtgactttgtggggaaatttttgtagcacggagggtaagcagctgcaaagt
atgtgtgactctggtgtgaatcctatattggcgattaaagctggtcgagttagtgatttt
agtggaaagtctattaatactattaattcaagtcaactgttcataaatcctgattttacg
gaggctcatagattgagagaatggtataatagagaaggtaagactatgactgctccgtca
atatctagagacacggccaccatgggtagaactgatgttcggaagacagttgcacagatc
aaggacgagggattgggaagatcggaaaaacctgactggataacagttaaggcaacagtt
acattcataaaagtcgataatttctgctatacggcatgtccattactggtaggggacagg
ccatgcaataaaaaggttaacaacaacggcgatggcaaatggcactgtgatcgctgcgac
cagagctttcctgagtgtgactataggtacctgctccagtttcagatccaggaccataca
ggtatgacatgggttacagctttccaagaatgtggggaggagattttgggagtcactgcc
aaggaactttacttgttgaaatacgaggaacaagatgacttgaagtttgcagaaattatt
cgaacagtgatcttccatcaatacgtattcaagttgaaagtgaaagaggagacattcagt
gatgaacaacgtgtgaaatcaactgttgtcaaagctgaaagagtaaatccatcctctgag
agcaggtaccttttgggtctgattgagaggctctcaactgaagaccccaatgcatccaca
gcggtacctggaacttttgctccaacctctggaattcccaactcttcatatgaccctgta
gagttgaattgtaatatctattctgctaacaataactatagcgcctttcacaatgctgat
ggatatagaactggagcaccaacaaatcaatcagtgcagtatgcaaatgactatggtgga
accattaagcaaagtttcagccgaaacgaagctcaactacaatgcaacaactgtggtggc
caaggccacagtttccagaattgtccaatcagcacaagtcggccagcccaatcggtcggt
ggtggatactctagtgctggcgcaaatgtttgcttcaagtgccatcaacctgggcactgg
gcgagtgaatgtcccggtgtaggagctgttacatcagcatataggggttctggcacatca
ggaagattcaccaggcaaaatataggtggcttctga
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