KEGG   Zingiber officinale (ginger): 122008486
Entry
122008486         CDS       T08725                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a isoform X1
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    122008486
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:zof04121]
    122008486
   03036 Chromosome and associated proteins [BR:zof03036]
    122008486
Enzymes [BR:zof01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     122008486
Ubiquitin system [BR:zof04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    122008486
Chromosome and associated proteins [BR:zof03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     122008486
    Noncanonical PRC1 (PRC1.1)
     122008486
    Noncanonical PRC1 (PRC1.3/1.5)
     122008486
    Noncanonical PRC1 (PRC1.6)
     122008486
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_5 zf-C3HC4_3 zf-RING_UBOX zf-C3HC4_4 zf-RING_4 zf-UDP zf-RING_6 zf-rbx1 zf-Nse DUF3408 zf-RING_10
Other DBs
NCBI-GeneID: 122008486
NCBI-ProteinID: XP_042420165
LinkDB
Position
8A:36772548..36783491
AA seq 470 aa
MPAQKRPMPPPPPPPLPSDDAPPEPPSQLQQQEDEEEEAVVTAVKEEEKSPSNLPQEQDG
SCEGEGGDSESEDDEDYADEFVVVKLADIRKEVQCPICLGIIRKTRTVMECLHRFCRVCI
DKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEELSFHEEEMYRNK
KLQESIAEIFRRQSEAVGKRKSTAKSTAAAFVRRSQGSYRNYGRGGSCGRDVTAASSDDD
DDEANANDIVNNDSSADEPSPDRRPKKRRKRWSTPRSSPAKINAGAGSDDNVDNEANREH
IGTSLQAGSRDILAWGKNGARSQTRHGNMSGLNGRMIKGGRITKLVDYLRSLDDNDDELD
VYLTLVPLDKERVPNLEQLNLCCRPTLSIRHLCNYIALQTSIPSEEVQIYTRIPERVASA
TNQSSSMDTASSELFSGLQKLEAQESLLTLYNSFLIKGELVLIYHTGIQT
NT seq 1413 nt   +upstreamnt  +downstreamnt
atgcctgcccaaaagcgcccgatgcctcctccgccgccgccgcctctgccctccgatgac
gcccctccggagcccccttcgcagctgcagcagcaggaggatgaggaagaggaagccgtg
gtaacggcggttaaggaggaggagaaatcgccctccaatctgcctcaggaacaggatggt
agttgcgagggggaaggtggcgacagcgagtcggaagatgatgaggactacgcggatgaa
tttgtcgtagtgaaattagcagacatacgcaaagaggtacaatgccctatctgtttaggt
ataatcaggaaaacgaggacggtcatggaatgcttgcaccggttttgcagggtatgcatc
gacaaatcaatgcggctggggaacaatgaatgtccagcatgtcgtactcattgtgcgagt
cgacgatctttaagagatgatccaaattatgatgcgctgattgcagctttgtacccagat
attgataaatatgaggaagaggagctatcttttcacgaagaagagatgtaccggaacaag
aagctacaagaatccatagctgagatatttcgacgacaatctgaggctgttggtaagaga
aaatcaacagcaaaatccacagctgcagcttttgttagaagatcacagggaagttatcgc
aactatgggagaggtggtagctgcggtcgtgatgttacagctgcaagctcagatgatgat
gatgacgaagcaaatgcaaatgatatagtaaacaatgattcatctgcagatgagccctct
cctgatagaaggcccaaaaaaagacgcaagaggtggagcacgccacgatcctcccctgcc
aaaatcaatgcgggtgctggcagcgatgataatgttgataatgaagctaacagagaacac
attggaacatctttgcaagcagggagcagagatattcttgcatggggtaagaatggcgca
cgtagccaaactagacatggtaatatgagcggcttaaatggtcggatgatcaagggtggg
cgaataaccaaattggtggactatctccgaagtctagatgacaatgacgatgagctcgat
gtgtatctgaccttggttcctttggacaaagagagagtaccaaatttggaacagctgaat
ctttgttgtcgaccgacattatcaattagacacctctgcaactatattgctcttcagaca
tcaattccatctgaagaagttcagatatatacgagaataccggaacgtgtagcctctgca
accaaccaatcgagttccatggatacagctagtagcgaactattttcaggcttgcaaaag
ttagaagcgcaagaatcacttttaaccttgtacaattccttcctcatcaaaggggagttg
gttttgatctaccatacgggaatacaaacatag

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