Zingiber officinale (ginger): 122008695
Help
Entry
122008695 CDS
T08725
Name
(RefSeq) DNA repair and recombination protein RAD54-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122008695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
122008695
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
122008695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
SLFN-g3_helicase
Ribosom_S30AE_C
AAA_22
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
122008695
NCBI-ProteinID:
XP_042420458
LinkDB
All DBs
Position
8A:43258565..43270808
Genome browser
AA seq
934 aa
AA seq
DB search
MASKQEEEEKEEEEREGEEFASSDSERGEEGSDYEEQDDEEIEQEGDEPEENQACSSESP
SSDQDRKSQNVAALLRGNLHVRRQPLIPRILSVSDGAAVARKPFKPPCSKRYKDQNDELS
RRLWARKRFVPWGSSAPRRPLVAIDYIQHPPSINSDDPEREDQLLPPGIEPLILWQADGT
DKTNDLPQIEVDALLVRYLRPHQREGVQFMFECVSGLSGSDGVSGCILADDMGLGKTLQS
ITLLYTLLRQGFDGKPMVKRAMIVTPTSLVSNWESEIDKWIGRKIRVVALCETTRADVLS
GIESFLNPCSAFQVLIISYETFRMHSSKFDKNGSCDLLICDEAHRLKNDQTLTNRALAAL
PCLRRVLLSGTPMQNDLEEFFAMVNFTNPGILGDASYFRRYYEAPIISGREPTATLEERK
LGIERSAELSAKVNQFILRRTNTLLSNHLPPKIIEVVCCRLTPLQLELYNHFIQSKNVKR
VISEEMKQSKILAYITALKKLCNHPKLIYDSIKSDKSGTSGFSDCIRFFPPELFSGRSGT
WTGGAGVWVELSGKMHVLARLLGHLRQKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRL
DGTTSIGKRQKLVNCFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQA
AARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQKEQAESEMPQGNFFSAE
DLRDLFTFHENVRSEIHENMNCARCKKEPTAMDRTSNEIELDNLGGSCEGKEQPNVAVND
IGGFAQVAGCSHKLQSSQRQLGTPSEEDLGSWGHHPDPATVPDAILQLSAGDEVAFVFTN
QVDGKLVPVESASRSQNQNQTYGNLMVSANFKQQNHNTRQKSLATVGTTVSWESKSIRRA
LPKLHAIEKPNASCGGLSSLKRTPTSDLSDDDFT
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaaacaagaagaagaagagaaagaagaagaagagagagaaggggaagagttc
gcatcttccgattccgagcgaggcgaggaaggatctgattacgaagagcaagatgatgaa
gaaatcgaacaagaaggcgacgaacccgaggagaaccaagcgtgctcctctgagtctccc
tcgtccgatcaggataggaagtcccagaacgttgctgcccttttgagaggaaatcttcat
gtaagaaggcagccacttattccacgaattctctctgtctctgatggagcagcagtggct
agaaaaccatttaagccaccgtgctccaaaagatacaaggatcaaaatgatgaactatct
cgacggctttgggctcgtaaaaggtttgttccatggggttcatcagcaccaaggagacca
ttggtagccattgactacattcagcatccacctagcattaatagtgatgatcctgaaaga
gaagatcagcttctgccacctgggatagagcctttaattttatggcaggcagatggaaca
gacaaaacaaatgatttacctcaaattgaggtagatgccttacttgttcgctatcttcgt
cctcatcaaagggaaggagttcaatttatgtttgaatgtgtgtctgggttatctggttct
gatggtgtctctggttgcattctggccgatgacatgggtttgggtaagacactgcaatca
ataactttattgtatacactccttcgtcaaggctttgatgggaaaccaatggttaagcgt
gcaatgattgttactcccacaagccttgttagcaattgggaatcagagattgataagtgg
attggacgaaaaattagagttgttgctctctgcgaaactacacgagctgatgttctatcc
gggattgaaagtttcctaaacccttgcagtgcttttcaggtgcttatcatatcttatgag
acattcagaatgcattcgtcaaagtttgataaaaatggaagttgtgatcttcttatatgt
gatgaagctcacaggcttaagaatgatcagacgctaactaatagagcattggctgctctt
ccttgtttaaggcgtgtcctattgtcaggaacaccaatgcagaatgatcttgaagaattt
tttgccatggtaaactttacaaatccaggaattctaggagatgcttcatatttccgacga
tactatgaggcaccaataatttctggacgagagccaacagcaactctagaagaaaggaag
ttgggtattgagagatcagcagaactgagtgcaaaagtaaatcagtttatacttagaagg
acaaacacattgttgtcaaatcacttaccacctaagataattgaagtggtatgttgtcga
ttgactcctctgcaacttgaactctacaaccattttattcaatcaaaaaatgttaagaga
gtcatatctgaagagatgaagcaatccaaaattttagcatatataactgctctaaagaag
ttatgcaatcatccaaagctcatatatgattctatcaaaagtgataaatcaggaacatca
ggattcagtgactgcatacgattttttcctcctgaattattttctggaagatctggtacc
tggactggtggtgctggagtatgggtggaactatctggaaaaatgcatgtcctggcacga
ctacttggacatcttcgtcaaaagacagatgacagaatcgttcttgtatccaactatact
cagacattggatctttttgctcaattgtgccgggaaagacgatacccctttttgaggctt
gatggaactacatccattggaaaaaggcagaagctggtcaattgttttaacgatccatct
aaggatgagtttgcattccttctaagcagcaaagctggtggctgtggacttaatttgatt
ggcggaaatcgtctggttctttttgatccagattggaatcctgctaatgacaaacaggct
gcagcaagagtgtggagggatggacaaaagaagcgagtctatatctatcgattcttaagt
acaggaaccatagaggaaaaggtgtaccagcgtcaaatgtcgaaggaaggacttcagaaa
gttattcagaaggagcaagcagaaagtgagatgccacaagggaactttttctctgcagaa
gacctgcgtgatctttttacttttcatgaaaatgtcaggtctgagattcatgaaaacatg
aattgtgcgcgttgcaagaaagagccaacagcaatggacagaacttcgaatgagatagag
ttagataatcttgggggctcatgtgaaggaaaagagcagcccaatgttgcggtgaatgat
attggtggatttgctcaagttgctggatgttcacataaattgcaaagctcacagcgacag
ctcggaaccccatctgaagaagatttgggaagctggggccatcacccagacccagcaact
gtacctgatgcaattcttcaattgtcagctggtgatgaggtggcatttgtatttactaat
caggtggatggaaagcttgttcctgttgaatctgcatcaagatcccaaaaccagaaccaa
acctatgggaacttaatggtgtctgcaaactttaaacaacaaaaccataacactcgccaa
aagagtttagcgactgtaggcaccaccgtgtcgtgggagtcaaagtcgataagaagagca
ttgcccaaattacatgcgattgagaagcctaatgcttcttgtggcggtctatcctccctc
aaaaggacacctacctctgatttgtctgacgatgatttcacttaa
DBGET
integrated database retrieval system
