KEGG   Zingiber officinale (ginger): 122008795
Entry
122008795         CDS       T08725                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1-like
  KO
K14962  COMPASS component SWD2
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    122008795
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zof03019]
    122008795
   03036 Chromosome and associated proteins [BR:zof03036]
    122008795
Messenger RNA biogenesis [BR:zof03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     122008795
Chromosome and associated proteins [BR:zof03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     122008795
    COMPASS/SET1 complex (yeast)
     122008795
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_IFT122_1st WD40 WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd WDR55 ANAPC4_WD40 WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_Aladin Beta-prop_SPT8 Beta-prop_TEP1_C Beta-prop_VPS8 Beta-prop_NUP159_NUP214 Beta-prop_NOL10_N WD40_RFWD3 PAC11 Beta-prop_EIPR1 TRM82_WD WD_LRWD1 PD40 Beta-prop_SCAP Tricorn_2nd DUF2963
Other DBs
NCBI-GeneID: 122008795
NCBI-ProteinID: XP_042420575
LinkDB
Position
8A:complement(45997673..46006022)
AA seq 329 aa
MPSVTELNDDIIRSMAVGAVFSDYVGNISSMDFHRTEDLLVTASEDDSIRLYDTANAKLL
KTTYHKKHGSDRICFTHHPSSILCSSRYNLELTNECLRYLSMYDNRCLRYFKGHKKRVVS
LCMSPINDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAYDQQGLVFAVAMEGGAIK
LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGRSMVLTTTNNNIYILDAYGGDKRCGFS
LEPSPNLTTEATFTPDGQYVLAGSGDGTLHAWLIEKPNEVSSWNSYIGAVSCLKWAPRRV
MFAAASSALTFWIPKSDEETKDGEAAVRE
NT seq 990 nt   +upstreamnt  +downstreamnt
atgccttctgttacagagctcaatgatgatatcatacgcagcatggccgtcggtgcggtc
ttctcggactatgtagggaatatcagttctatggattttcatcgaacagaagaccttctt
gttactgcaagtgaggatgactctatacgcttgtatgatactgcaaatgctaagttattg
aagactacatatcacaagaagcatggttctgaccgcatttgctttacacaccatccaagt
tccattttatgctcatcaagatacaacttagagttgacaaatgaatgcttgcgatatctt
tccatgtatgataaccgttgtctgcggtattttaaaggccataagaaaagagttgtttca
ctttgtatgtctccaataaatgatagcttcatgtcaggctctcttgaccatagtgtaaga
atatgggatcttcgtgtaaatgcttgccaagggattctgcgtttgcgtggaaggcctact
gttgcctatgatcaacagggccttgtctttgcagtggcaatggaaggaggtgccatcaaa
ttgtttgattctcgttcatacgataagggtccattcgatactttcctggttggtggagat
acagctgaggtctgtgatatcaagttcagcaatgacggcaggtctatggttttgacaacc
acaaataataatatctacattctagatgcttatggaggagataagcgttgtggcttcagt
ctggagccttcacctaatttaacaactgaggccacttttactcctgatggacaatacgtt
ctggcaggttctggagatggtactttgcatgcttggttgattgaaaagcccaatgaggta
tcatcctggaatagttatatcggtgcggtatcctgcttgaagtgggctccgaggagagtc
atgttcgctgccgcatcctctgccctaacattttggatacccaagtcagacgaggaaacc
aaagacggtgaagctgctgttagagaatga

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