Zingiber officinale (ginger): 122008802
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Entry
122008802 CDS
T08725
Name
(RefSeq) probable CCR4-associated factor 1 homolog 6
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122008802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122008802
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122008802
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122008802
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
122008802
NCBI-ProteinID:
XP_042420583
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Position
8A:complement(46134344..46135471)
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AA seq
268 aa
AA seq
DB search
MSKSDQAGGVEIRDVWAGNIEAEFEIIREIVDDFPFVAMDTEFPGVAIRPLGDFMCHADN
NYHVLRANVDLLHLIQLGLTFTNAAGILPFSESGRPIVWQFNFMEFDVDRDISNPDSIDL
LKKSGIDFAMNREHGVDAKRFAELLMSSGVVLNDSISWVTFHCAYDFGYLLKILTCRRLP
ETREEFLQLVRTFFPVVYDIKHLMRFSNSFHGGLNKLAEQLEIDRVGICHQAGSDSLLTA
WTFRKLLEKHFDAPIERYAGVMYGLETE
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagagcgaccaggctggcggtgtcgagatccgcgacgtttgggcaggcaacatc
gaagcagagttcgagatcatccgcgagatcgtcgacgacttccctttcgtcgccatggac
accgagttccccggcgtcgccatccgccccctcggagacttcatgtgtcacgcggacaac
aactaccatgtcctccgcgccaacgtcgacctcctccacctgatccagctaggtctaacc
ttcaccaacgccgccgggatcctccctttctcggaatctgggcgtcccatcgtgtggcag
tttaacttcatggagttcgacgtcgaccgagatatcagcaaccctgactccatcgatctc
cttaagaagtcgggcattgatttcgccatgaatcgggagcatggggtggacgccaagcgc
ttcgcggagctcctcatgtcgtcgggcgtcgtcctcaacgattctatcagctgggtgacc
ttccattgtgcctacgatttcggatacctcctcaagatcctgacttgcagaaggttgccg
gagacaagagaggaattcctccaactcgtcaggacgtttttccctgttgtgtacgacatt
aagcacctcatgaggttttcaaacagcttccatgggggtcttaacaagctcgctgagcag
ttggagatcgatagggtcgggatctgccatcaggctggttcagatagtttgcttactgct
tggacattcaggaaactgttggagaaacactttgatgcgccgattgagagatatgctgga
gttatgtatggactggaaactgaatga
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