Zingiber officinale (ginger): 122008838
Help
Entry
122008838 CDS
T08725
Name
(RefSeq) protein SMG7-like
KO
K14409
protein SMG7
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122008838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122008838
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
122008838
mRNA cycle factors
Common to processing body (P body) and stress granule
122008838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
122008838
NCBI-ProteinID:
XP_042420634
LinkDB
All DBs
Position
8A:complement(46960661..46968466)
Genome browser
AA seq
966 aa
AA seq
DB search
MMIVPMDRSSSPSSRELVQRLLKKNIDLENGLRRSAQSKVPSDPNSWFQMRENYETIILE
DHDFSEKHDIEYVLWQLHYKRIEEFRHHINAASSAGSNTSGAKALVRLDKVKKIRSVFKS
FLMEATGFYHDLILKIRAKYGLPLSYFNEGTDSENILTKDEKKLAEMKKGLMSCYHCLIY
LGDLARYKGLYGEGDSVRRDFAAATSYYMQATSMCPSHGNPHHQLAILASYSGDELLAIY
RYFRSLAVDIPFSTAKDNLIVAFEKNRQSFSQLSCNSKTTSTGRIHMLSAGQARGGGNEK
LLEEDNKVESIHKEREMTKSEVLNAFSTRFVRLNGILFTRTSLEIFEEVFSSLINDLNVL
LSLGPEENLNFGLDAIENASACLRLIAILIFTIHNVKRESENQSYAEVLQRTVLLQNAFI
FIFEFAGHIFKRCIDLHDGASSFLLPSILVFIEWLACHPDEAAASDIGEKFAVTRLFFWS
QCVALLNKLIQTGLVSVDGDSDEACFFSMNRYESETDNRVALWEDFELRGFSPMKPAHTI
LDFSRKHTYGSDGGKDKLSRVQRIIAAGRALAGVVSVNQQRIYIDPSLKKFIMSKAPPMI
GGLMDSTLSSSFDPIERILDIGRVPNTSSSGFSQTKTRPCVEGEEEEEEIVFRPTISDKY
EDVNASKLTTFDIFNPLQASSAGDWMAHSHPLSVPFDDVPISAVSNASLNLHPYANTITQ
LPLQHINSTSRWFPKQDEFLSDGLRNMNISGHLYMNNQMLQEGSNNFQRNSFLPGVCSSA
IPNANSAHSGQYKTSEVLFSTPLDTLVHSGAASDGSVLRPSLPLPSLRKTPVSRPVRHLG
PPPGFGHIPSKQQEEAIPNSYVKEQQPELDDYGWLDGHQSSSSKSIGMVNSLNQHPHGYP
YANMSTTTAFANASSFPFPGKQVSSIQAQATDGHDLQDFEQLKARTRHKLEQSTPQNTLV
PEQRQA
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
atgatgattgttccaatggacaggtcatcgtctccctcgtctcgggagcttgtacaacgg
cttcttaaaaagaatattgatctagagaatggtttgcgaaggtcagctcagtcaaaagtt
ccttcagaccccaattcttggtttcaaatgcgagagaactatgagactataattcttgaa
gatcatgatttttcagaaaaacatgatatcgagtatgtcctttggcaactgcattataaa
agaattgaagagttcaggcaccatattaatgctgcatcatctgctggatctaatacatct
ggtgcaaaggccctggttcgtcttgataaagtgaagaaaatccgttctgtctttaaaagc
tttctgatggaagcaactggattttaccatgatctgatattgaaaatcagggcaaaatat
ggcctacctttgagctactttaatgagggaactgacagtgaaaatattttgacaaaagat
gagaagaaattggctgagatgaagaaaggacttatgtcttgttaccattgtttgatatat
ttgggagatcttgctcgttacaaaggactttatggggagggagactctgttagacgtgat
tttgcagctgctactagttactatatgcaggcaacttctatgtgtccttcacatggtaat
ccacatcaccagctggcaatacttgcttcctactcgggtgatgaactgttggcaatctac
cgctacttcagaagtctggctgtcgatattccattttcaacagcaaaagataacttgatt
gttgcttttgagaagaaccgacaaagtttctcacagctgtcttgcaattcaaaaacaacc
tcaacgggaagaattcatatgctgtcagctgggcaagctagaggaggtgggaatgaaaag
cttctggaggaagataacaaagtagaaagtatccataaagagagagagatgactaagtca
gaagtacttaatgccttttctactcgctttgttcgccttaatggtatccttttcacgcga
acaagcttggaaatttttgaagaagtattttcttcattaattaatgatctgaatgtgctt
ttgtccttgggtcctgaagagaatcttaattttggtcttgatgctattgaaaatgcatca
gcctgtctgaggcttattgccattctgatattcactatacataatgtgaaaagagagtct
gagaaccaatcgtatgctgaggtcttacagcgaactgtgttgttgcagaatgcatttata
tttatttttgagtttgctggtcacatttttaagcgatgcatagatcttcatgatggtgca
tcaagctttcttttgccatctatcctggttttcattgagtggttggcatgtcatccagat
gaagcagctgcttctgatattggggaaaaatttgctgttacaagattgttcttctggagc
caatgtgttgcattattgaacaagcttattcagactggtcttgtatctgttgatggtgac
agtgacgaagcttgctttttcagtatgaataggtatgaaagtgaaactgataatagggtt
gccctctgggaggattttgagttgagaggattctcacccatgaaaccagcacataccatc
ttggatttttcaaggaaacatacctatggaagtgatgggggcaaggataaattatctcgt
gtccagaggattatagccgctggtagagctcttgcaggtgttgtttcagttaatcagcag
agaatatatattgatccaagcctgaagaaattcataatgagcaaagcgccaccaatgatt
ggaggccttatggattctaccctttcaagttcatttgatccaattgagagaatacttgat
attgggagagtgccaaatacatctagttcagggttttcacagactaagacaagaccttgt
gttgaaggagaagaagaggaagaagaaattgttttcaggcctacaatttctgacaaatat
gaagatgtaaatgcttcaaaattgactacttttgacatattcaatcctctacaagcatca
tctgcaggtgattggatggcacattctcatcctctttctgttccttttgatgatgttcca
atttcagctgtttcaaatgcgagtttgaatctgcatccatatgccaatactatcacgcag
cttcctttgcagcatattaactctacttccaggtggtttccaaagcaagatgaattcctc
tctgatggactaagaaatatgaatataagtggacatttatatatgaataaccaaatgttg
caagaaggatcaaataactttcagcgaaattcatttttacctggagtttgttcttctgcc
attccaaatgctaacagcgcacactctggtcaatataaaacatcagaggttttgttttcg
accccacttgatactttggtgcattcaggagcagcatctgacggaagtgttttgagacct
tctctacccttaccatcactcagaaaaactcctgtaagtcgtccagttaggcacttgggg
ccacctcctggatttggccatattccttcaaagcagcaggaggaagcaattcctaactct
tatgtaaaggaacagcagcccgagcttgacgattacggatggctagatggtcatcaatct
tcatcttctaagagcatagggatggtgaactcactcaatcaacatccgcacgggtatcca
tatgctaatatgagtactactactgcctttgccaatgcttctagttttccatttcctggg
aaacaagtttctagtatacaggcacaggcaactgatgggcatgatcttcaggattttgag
caactgaaagcccgtactaggcataaacttgagcaatcgaccccacaaaacactctggtg
cctgaacaacgtcaagcataa
DBGET
integrated database retrieval system
