Zingiber officinale (ginger): 122008848
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Entry
122008848 CDS
T08725
Name
(RefSeq) cell division control protein 48 homolog C-like isoform X1
KO
K14571
ribosome biogenesis ATPase
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122008848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
122008848
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
122008848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
AAA_5
RuvB_N
AAA_2
AAA_16
TIP49
AAA_14
RNA_helicase
AAA_22
Rad17
AAA_28
nSTAND3
AAA_33
NPHP3_N
ABC_tran
AAA_17
AAA_18
AAA_3
NB-ARC
AAA_11
Mg_chelatase
ATPase_2
Viral_helicase1
Bac_DnaA
NACHT
Nucleolin_bd
TsaE
IstB_IS21
AAA_19
AAA_29
AAA_7
Parvo_NS1
SKI
bpMoxR
AAA_lid_PRS2_C
CPT
Motif
Other DBs
NCBI-GeneID:
122008848
NCBI-ProteinID:
XP_042420654
LinkDB
All DBs
Position
8A:47095820..47103478
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AA seq
806 aa
AA seq
DB search
MGKRGRWDFGRSFAGILRDRIASSGINFEEVVDVDALIANLRSSNRDYARLKAQPFARAV
RRTLASLSCKPAAAAAAREDNDIEDAGIDPASPGISRSALGRGDSVDSRLLRSETDETVS
DAQVEPEFDLMKSMLRDGYGKKSNSSKKDELESSCEEELDLEVEMEKPRKMRKVQKAIGR
SGPGNEAEISIEKENTGGGGILDCVMEQGPRFCDLGGMKEIIEEMKLKVLYPLLVPELVQ
NLGIKPITGILLHGPPGCGKSTLAYAIANEAKLPFHKIDATQIVSGITGASEENIRDLFC
KARRTAPSIILIEEIDAIASKRENEQKGMERRIVNQLMTCMDQSRKFHKTHNTNSKSETF
DWKSDYVLVIGTTNNPDDLDSALRRTGRFDREIALGVPDENARLAILSILTHNLYLDGQL
NLSEIARRTSGFVGSDLVSLCNEAGFIAINHNVDGRKVQLSLEGKSIDDWCEERPDVEEI
NSVKIRMSDFKESLKIVQPSSMREGFSPIPNITWDDVGGLSSLKKIFEKIIIDRIKYPEV
YKKNGVKFEDGILLYGPPGCGKTLIVKAVANVVGVNFIYIEGPELLNKYVGESERKIRKV
FRRAQACSPCIVFFDEIDVLARKRKGENSRVVEQQLAQLLLELDGAKERKDVFVIAATNR
PEAVDPALLRPRRLGKVVYVSLPSFDERLLILKALAREMPISEDVDLVALAEECSNFSGA
DLASLMSEAATALSTEEIDCIKQGIEITQQSGIKPLHFRQVLQTIKPSVSEKVILEFLLQ
VILIISFSSWAEALCFGLLILMFVGL
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagcgaggaaggtgggacttcggccgctccttcgccgggatcctccgcgatcgc
atcgcttcttccggcatcaacttcgaagaagttgtagatgttgatgctctaatcgctaat
ctgcgctcttcgaatcgtgactacgcccgccttaaagcccaaccctttgcccgcgccgta
cggagaacgctagcgtctctcagctgcaagcccgccgccgcagccgctgcccgtgaagat
aacgacatagaagatgccggaattgatcctgcgagtcccggaatttctcgcagcgcgctc
ggacgtggtgactcggtagacagccgtcttcttcgctctgagacggacgagactgtctcc
gacgcccaggtagagccggagtttgatctgatgaagtccatgcttcgtgatggatatgga
aagaaatccaactcgtcgaaaaaggatgagctcgagtcatcatgcgaagaagaactggat
ttggaagtggagatggagaagccgaggaagatgaggaaggtgcagaaggctattggcaga
agtggtccagggaatgaggctgagatctctattgagaaggagaatactggaggtggtggg
atattggattgcgtgatggaacaagggccacgattttgtgatcttggtggcatgaaggag
attattgaagaaatgaaactgaaggtgctatatcctcttcttgtgccagagctggtacag
aatttgggaattaagccaattactggaatactcttacacggcccacccggttgtgggaag
tcaacacttgcatatgccatagctaacgaggcgaaattgccattccacaagatcgatgca
actcaaattgtatctggaatcaccggtgcttctgaggagaatatacgagatcttttttgc
aaggcacgtcggactgctccgtcgataattctcatcgaagaaatagatgccattgcctcc
aagagggaaaatgagcagaaggggatggagcgccgaatagtgaatcaattaatgacttgt
atggatcaatcacggaaatttcacaagacacataatactaactcaaaatcagaaactttt
gattggaaatctgattatgttcttgttattggcactactaataatcctgatgatctggac
tctgcattgagaagaactggacgatttgatcgtgagattgctttaggtgtccccgatgaa
aatgcaaggcttgcaattttgtctattctcacgcataacctatatcttgatggccaattg
aatctctctgaaatagctcggcgcacatcaggttttgtggggtctgatttggtttcattg
tgcaatgaagctggttttatagcaataaatcataatgtagatggaagaaaagttcaactt
tcattagaaggaaaaagcatagatgattggtgtgaagaacgccctgacgttgaagaaatt
aatagtgttaagattcgaatgtcagactttaaggaatcactgaaaattgttcaaccttct
tctatgagagaaggattttccccaataccaaacattacatgggatgatgttggtggtctt
tcttcattaaaaaaaatatttgagaagattataattgatcgtataaaataccctgaggtt
tataagaaaaatggagtcaaattcgaggatggaattttattgtatgggcctccgggttgt
ggtaaaacattaattgtcaaggcagtagcaaatgttgtcggagtcaattttatttacata
gagggtcctgaattactaaacaaatacgttggtgaaagtgagcggaaaataagaaaagta
tttcgtcgtgctcaggcgtgttctccttgtatagttttctttgatgagattgatgttttg
gcacgtaagcgcaagggagaaaattcacgagttgttgaacaacaattggcccagctactt
cttgagctagatggtgctaaagagcgaaaagatgtatttgttattgcagcaacaaacaga
cctgaggctgtggatcctgctctcctaagaccacgaaggttgggcaaagttgtatatgtt
tcattgcctagttttgacgaacgactactaatattgaaggcacttgctcgagagatgcct
atttcagaagatgtagatttggttgctctggcagaggaatgttctaacttcagtggtgct
gatctagcttctttgatgagcgaagctgccacggctctttcaacagaggagattgattgc
ataaaacagggtattgagattacacaacaaagtggcattaagccattgcactttaggcaa
gttctgcagacaatcaagccatccgtctctgagaaggtaatcttagaatttttgcttcaa
gtaattctaataatttccttttcaagttgggcagaagccctgtgctttggactacttatt
ctcatgtttgtaggcttgtag
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integrated database retrieval system
