Zingiber officinale (ginger): 122009118
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Entry
122009118 CDS
T08725
Name
(RefSeq) cell division control protein 48 homolog C-like
KO
K14571
ribosome biogenesis ATPase
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122009118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
122009118
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
122009118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
AAA_5
RuvB_N
TIP49
AAA_16
AAA_22
RNA_helicase
AAA_2
Nucleolin_bd
AAA_18
AAA_17
AAA_33
AAA_28
Mg_chelatase
IstB_IS21
Vps4_C
NPHP3_N
Rad17
AAA_14
Parvo_NS1
Bac_DnaA
AAA_3
ABC_tran
nSTAND3
NB-ARC
ATPase_2
TsaE
Viral_helicase1
AAA_24
TniB
PduV-EutP
TTC3_9th
Motif
Other DBs
NCBI-GeneID:
122009118
NCBI-ProteinID:
XP_042421071
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All DBs
Position
8A:complement(55263279..55273725)
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AA seq
800 aa
AA seq
DB search
MGKRGRRDFGRSPAAILRRRIASVGVNAEEGVDIDSVVANLRSAYPDYARLKFQTFTRNV
QRTLESLGRKSSASAAHEDSDEDMDDTGIDPASPGISRRTPGRCDPAESRLLRAESEHLR
RRMAVKPDLVDENHSEYSSDDSVFDAKVEPKFDLMKSMLRDGYGKKSNSSKKDDLKSSNK
EELALEVEMEKPMKKTKVQNAIDGSDPGSGAEISIEKENSGSGITDTVMEQRPLFCDLGG
MRDVIEILKRDVLFPLLHPKLVQKLGISRMTGILLHGPPGCGKSKLAQAIGNETKLPFYK
IDATEIVSGVSGASEENIRDLFRKAYRTAPSIILIEEIDAIAAKRDNQQKGMERRIVIQL
MACMDQSQKSETFDGKSDYVIVIGTTNNPDVLDSALRRCGRFDREIALGVPDENARLEIL
SVLTRNLNLEGQFKLSEIARSTPGFVGSDLASLVNQAGNIAMMRMAERKKFQLLLKDKSR
DNWWKEPLDDEEIESGRITMSDFKEALKLVQPSSMREGFSPIPNITWDDVGGLTSLKNKF
EDFIIKRIKYPAVYEEFGVNLEDGILLYGPPGCGKTLVAKAVANAAGANFIHIQGPQLLN
KYVGESELAIRTLFRRARMCSPCIVFFDEVDALACKRGGEGAWVVERQLIQLLVELDGAE
ERKGVFVIAATNRPDVVDPALLRPGRLGNVIYVPLPNSDERLLILKALARKKPILEDVDL
VALAEQCLNFNGADLASLMNGAASAATGEKLDCIDRGINITKPAMIKMSHFEHVLQTIKP
SVSMQERIYYEQLSKNFKVS
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagcgaggaaggcgggacttcggccgttcccctgccgcgatcctccgtcgccgc
atcgcttccgtcggcgtcaacgctgaagaaggggtagatattgactctgtcgtcgccaac
ctccgctctgcctatcctgattacgcccgtctcaaattccaaacgtttacccgcaatgta
cagagaaccctagaatctctcggccgcaagagctccgcctccgccgcacatgaagatagc
gatgaagacatggacgataccggaattgatcctgcgagtcccggtatttctcgcaggaca
cccggacgttgtgacccggccgagagccggcttcttcgcgctgagtctgagcacctccgc
cgtcggatggctgtgaagccagatttggttgatgaaaatcatagcgaatactcctccgac
gattctgtcttcgacgccaaggtagagccgaagtttgatctgatgaagtccatgcttcgg
gatggctatggaaaaaaatccaactcatcaaaaaaggatgatctcaagtcgtcaaacaag
gaagaactggctttggaagtggagatggagaagccgatgaagaagacgaaggtgcagaat
gctattgacggaagtgatccagggagtggggctgagatctctattgagaaggagaatagt
ggcagtggaataacggatactgtgatggaacaaaggccactattttgtgatcttggtggt
atgagggatgtcattgagattttgaaaagagatgtgttatttcctctgcttcatccaaag
ctggtacaaaagctgggaatttcacgaatgactggaattctcttacacggaccacctggt
tgtgggaagtcaaaacttgcacaagccataggtaatgagacaaaattgccattctacaag
atcgatgcaactgaaattgtatctggagtctctggtgcctctgaggagaatatacgagat
cttttccgcaaggcatatcggactgctccctcaataattctcattgaagagatagatgcc
attgccgctaagagggacaaccaacagaaggggatggagcgtcggatagtaattcagcta
atggcttgtatggatcagtcacaaaaatcagaaacatttgatgggaagtctgattatgtt
attgttattggcactactaataatcctgatgttctagactctgcattgagaagatgtgga
cgatttgatcgtgagattgctttgggtgtccctgatgaaaacgcaaggcttgaaattttg
tcagttctcactcgtaatctaaatcttgaaggccaattcaagctctctgaaatagctcga
tccacaccaggttttgtagggtctgatctggcttcattagttaatcaagcaggtaacata
gcaatgatgcgtatggcagaaagaaaaaagtttcaacttttattaaaggataaaagcaga
gataattggtggaaagaacctctcgatgatgaagaaattgagagtggcaggattacaatg
tcagactttaaggaagcattgaagttggttcaaccttcttccatgagagaaggattttcc
ccaatacccaacattacatgggacgatgttggtggccttacttcattaaaaaacaaattt
gaggattttataattaaacgtataaaataccctgcggtttatgaggaatttggagttaat
ttggaggatggaattttattgtatgggcctccaggttgtggtaaaacattagttgccaag
gctgtagcaaatgcagcaggagccaattttattcacatacagggtcctcaattgcttaac
aaatatgttggtgaaagtgagttggcaataagaacattatttcgtcgtgctcggatgtgt
tctccctgtatagttttctttgatgaggtggatgctttggcatgcaagcgtgggggagag
ggtgcatgggttgtcgaacgacaattaatccagctacttgttgagctagatggcgctgaa
gaacgaaaaggtgtatttgtcattgcagcgacaaacagacctgatgttgtggatcctgct
ctactaagaccaggaaggttaggtaatgtcatatatgttccattgcccaattccgacgaa
cgactactaatactgaaggcacttgctcgaaagaagcctattttagaagatgtagatttg
gttgctcttgcagaacaatgtttaaatttcaatggtgctgatctagcttctttgatgaat
ggagctgcctcggctgccactggagagaagctggattgcatagaccggggtattaatatt
acaaaacctgccatgatcaagatgtcacactttgagcacgtgctacagacaatcaagcca
tctgtctctatgcaggaaaggatatattatgagcagttatcgaaaaacttcaaagttagc
tga
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