Zingiber officinale (ginger): 122009292
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Entry
122009292 CDS
T08725
Name
(RefSeq) probable E3 ubiquitin ligase SUD1
KO
K10661
E3 ubiquitin-protein ligase MARCH6 [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122009292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122009292
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122009292
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
March proteins
122009292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MARCHF6_C
RINGv
zf-RING_2
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
122009292
NCBI-ProteinID:
XP_042421335
LinkDB
All DBs
Position
8A:complement(63816599..63824373)
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AA seq
1112 aa
AA seq
DB search
MEDTADHPLLSLSDDGQASVGSPSSSSSASPPPPPPSPPTVSRASRYDDDDDDEGDVCRI
CRNAGDDDNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHTFSFSPVYSENAPA
RLPLKEFVVGTAMKACHVMQFFLRLAFVLSVWLLMIPFITFWIWRLTFVRSLGEAQRLFL
SHLSAPVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGNDAERDDEGQERNGAR
AVRRLPGPVNRNPAGDGNVEDAGGAQGIAGAGQLIRRNAENVAARLEMQAARLEAQVEQI
FDGLDDADGAEDVPFDELVGMQGPVFHLVENAITVLASNAIFLGVVIFVPFSLGRISLYY
ITWFFSSVSSPVTEKVVPISESALSVMNNTLKNGLIAMKNLSTENHADGVLDQILEVVNG
SQIVNATGTNEISIIVGRTTAADLLKGTIAGSSHLSDVTTLAVGYIFIFCFVSFYLGLVA
LIRYSRGERIIFGRLYGLLAAAEAIPSLLGQFLAAMRHLMTMVKVAFLLIIELGVFPLLC
GWWLDVCTLKMLGTTITQRIELFSASPLASSSIHWLVGIVYMLQISIFVSLLRGVLRNGV
LYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSIAVYGSLIVMLVFLPVKLSMRLLPSMF
PLDITISDPFTEIPTDVLLFQICIPFAIEHFKLRTTIKSLLHHWFTAVGWALGLSDYLLP
RAEDNGNQDAGNIEPVRRDRLHNARLGGPQQNDLPLVPRIAADDQGRDDIIGNADVAEES
DADDQADSEYGFVLRIVFLLVLAWMTLLIFNSAMIILPVSLGRALFNAIPRLPITHGFKC
NDLFAFSIGSYIICTTVAGTRYSVDYIKTRRLRVLLLQTWRWGTIIVKSSALLSIWIFII
PVLIGLLFELLVIVPLRVPVDESPVFLLYQDWALGLIFLKIWTRLVILDQMAPLVDENWR
RKFERVREDGFSRLQGLWVLREIMIPIVSKLLTALCIPYVFAKGIFPVFGYPLIVNSAVY
RFAWLGCLLFSLFCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEVFTGDQESRSDSQ
ESNSADAGLILHEQEAAMGLRLRRANQRQHIR
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaccgccgatcaccccctcctttccctctccgacgacgggcaggcatccgtg
ggcagcccttcgtcttcctcctcggcttctccgccgccgcctcccccttctcctcccacg
gtttcgagggcctccaggtacgatgatgacgatgacgacgaaggcgacgtgtgccggatc
tgccgcaacgcgggggacgacgataacccccttcggtatccttgcgcgtgcagcgggagc
atcaagtttgtgcaccaggactgcctcctccagtggcttaaccacagcaacgcgcgtcag
tgcgaggtctgcaaacatactttttctttctcccctgtgtattctgagaacgctcctgca
aggctgcctcttaaagaatttgttgttggaacagcaatgaaagcatgccatgttatgcaa
ttcttcttacggcttgcttttgttctttctgtttggctccttatgataccatttattact
ttttggatttggcgcctaacctttgtgaggagtcttggtgaagctcagaggctatttttg
agccatctatctgctcctgtaatactcacagattgtttacatggtttcctactttctgct
agcattgtgttcatatttcttggggcaacctctttaagagattattttagacatttacgt
gaacttggaggtaatgatgctgagagggacgatgaaggtcaggaaaggaacggggctcgt
gctgttaggaggttgcctggtccagttaacaggaatcctgctggtgatggaaatgttgaa
gatgctggtggagctcaaggtattgctggagctggccaattgattagaagaaatgcagaa
aatgttgctgctcgattggaaatgcaagctgctcgtcttgaagcccaggttgaacagata
tttgatggactagatgatgctgatggcgctgaagatgtgccatttgatgagcttgtagga
atgcaagggcctgtatttcatttggttgaaaatgctataacggtgttggcaagcaatgct
attttcctgggtgttgtcatttttgtccctttctcattagggaggatctctctctactac
atcacatggttcttttcatcagtttctagcccagtgaccgaaaaagttgtgcccatttca
gaatcagccctctcagtaatgaataatacattgaagaatggactgattgctatgaagaac
ttgtcaactgagaatcatgcggatggtgtcttggaccagatactggaggtggttaatgga
tcccaaatagtgaatgccactggaacgaatgagatctcaatcattgttggcaggaccact
gctgctgatcttctcaaggggacaatagctgggtcctcccatctttctgatgtgactacc
cttgctgtcggctatattttcatattctgctttgtttccttttatcttggtcttgttgct
ttgatacgatatagtagaggcgagcgcattatattcgggaggctctatggcctacttgct
gcagcagaagcaattccttctctccttgggcaatttcttgcagcaatgagacatctgatg
acaatggttaaggttgcatttttgttgattattgaacttggagtctttccacttttatgt
gggtggtggctcgatgtgtgcactttgaagatgctggggacaacaattactcaaagaatt
gaattattttctgcctcaccattagctagctcctcgattcactggcttgttggcatagtt
tacatgctccaaatcagcattttcgtcagtcttctcagaggggtattgaggaacggagtt
ttatattttctgcgggatccagcagatccaaactataatccattccgtgacctcattgat
gacccagtgcataaacacgcacggcgtgtattgctatctattgctgtttatggtagtctg
atagtgatgcttgtctttttacccgtgaagctttctatgcgcctcttaccttctatgttc
cctctggacatcactatttctgatccatttacggaaattcctacagatgttctgctgttc
caaatttgcataccatttgctatcgagcactttaagctacgtacaacaataaaatctctt
ttgcaccattggtttactgcagttggttgggctcttggtttgtctgactacttgctacct
agagctgaggacaatggaaaccaagatgctggcaacattgaaccagtgagacgggacaga
ttacacaatgctcgccttggtggacctcaacagaatgatctacctttggtgccaagaatt
gccgctgatgatcaaggcagggatgatattatcggaaatgcagatgtggctgaagaatct
gatgctgatgatcaagcagattctgagtatggtttcgtactccggattgtctttttgcta
gtattggcatggatgactcttttgattttcaactctgcaatgatcatccttcccgtctcc
ctcggtcgtgcgctgtttaatgccattcctagacttccaattactcatggcttcaagtgc
aatgatctctttgctttcagcattggctcttacatcatctgtaccactgtagctggaaca
aggtattctgttgattacatcaaaacccgtagactacgtgttttgcttttgcagacatgg
aggtggggaacaattatagtcaagagctctgcccttttgtcaatatggatatttatcatt
ccagtacttattggtctcttgttcgagcttctggtgattgtgcctctgagggtgcctgtg
gatgaaagcccggtatttctcctctaccaggactgggctttagggctcatcttcttgaag
atctggactcgcttggtgatcttggatcagatggcgccactagtagacgaaaactggcgt
cggaagtttgaaagagtaagagaggatggcttctcgcgactgcagggattgtgggtgcta
cgtgagataatgattccaatcgtctcaaagcttctgactgcactctgcattccctacgtc
ttcgcaaaaggcatcttccctgtctttggttatccgctgatagtgaattccgctgtgtac
cgttttgcatggctgggatgcctcctgttcagtttattctgcttctgcgccaagaggttc
cacgtctggttcaccaaccttcacaattccatcagggacgaccggtatctcattggacga
aggctgcataactttggcgaagtgtttaccggcgatcaagagtctaggtctgacagtcag
gagtcaaactctgctgatgctggtttaatacttcatgagcaagaggctgccatggggttg
aggcttaggcgagcaaatcaacgccagcacatcaggtag
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