Zingiber officinale (ginger): 122009366
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Entry
122009366 CDS
T08725
Name
(RefSeq) WD-40 repeat-containing protein MSI2-like isoform X1
KO
K10752
histone-binding protein RBBP4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03082
ATP-dependent chromatin remodeling
zof03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122009366
03083 Polycomb repressive complex
122009366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
zof03036
]
122009366
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
122009366
Histone modification proteins
HAT complexes
HATB complex
122009366
HDAC complexes
Sin3A-HDAC complex
122009366
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
122009366
PRC2.2
122009366
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
122009366
Heterochromatin formation proteins
Other heterochromatin formation proteins
122009366
Chromatin remodeling factors
NuRD complex
122009366
NuRF complex
122009366
NuRF complex (fruit fly)
122009366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
CAF1C_H4-bd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD_LRWD1
WDR55
WD40_WDHD1_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
MIOS_WD40
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_RIG_1st
Beta-prop_NUP159_NUP214
RMC1_N
Motif
Other DBs
NCBI-GeneID:
122009366
NCBI-ProteinID:
XP_042421423
LinkDB
All DBs
Position
8A:67367353..67370545
Genome browser
AA seq
402 aa
AA seq
DB search
MTVTEADEGREAGEDYRSWKVNTPILYDLVISHPLRWPSLTVRWLPGSSPSSSSGSSRVG
ATHRLLLGSHTSDYAPNFFMTADVLFPLPPEAHPGAPLPKVEISQTIPHHGKVNRARFMP
QRPSVVATMTQDAEVHVFDCERRPLRPVEGEESGPDVVLRGLSKEGYGISWSPHKEGFLL
CGSYDSKICLWDVGMMPEEKILDARYLFEAHTDSVEDVAWHLKNENMFGSVGNDHLLMIW
DVRSSASGKPQQSLKAHENEVNSLSFNPFNDWILATASKDSTVNLFDLRKLATSLHTCLS
HVGSVVQVEWSPSHETIFATSATDKRLIIWDLNRIGDEQTADEAVFGPPEAFFVHAGHTA
KISEFSWNPEEPWVIASVADDNILQVWQMAERYRDDGSNDHR
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgacggtgacggaggctgatgagggccgcgaggcgggtgaggattaccgttcgtggaag
gtgaacacccctattctatacgacctcgtcatctcccaccccctcaggtggccctccctc
acagtccgatggctcccgggctcgtcgccgtcttcctcctccggaagcagccgcgtcggc
gccacccaccgcctcctcctcggcagtcacacctccgactacgctcctaacttcttcatg
accgccgacgtgcttttccccctccctcccgaggcccatcccggcgcgccgctccccaag
gtcgagatctcgcagaccatccctcatcacgggaaggtcaatcgcgcccgattcatgccg
cagagaccatcggttgtagccaccatgacccaagacgcggaggttcacgtgttcgactgc
gagcggcggccactgaggccggtcgagggggaggagagtggtccggacgtcgtcttgagg
ggcctctccaaggagggatatgggatctcgtggagtccgcacaaggagggctttctcttg
tgcggatcgtatgattccaagatctgtctgtgggatgtgggaatgatgccggaagagaag
attcttgatgcaagatacctgtttgaggcccatactgattctgttgaggatgttgcttgg
cacttgaagaatgaaaacatgtttgggtccgttgggaatgaccatcttttgatgatttgg
gacgttcgctcatcggcatctggaaagccacaacagtcattaaaagcccatgaaaatgag
gtcaattcactatcatttaatccgtttaatgactggattttggcaacagcgtctaaagac
agtacagttaacctatttgaccttcggaagctcgctacaagtttacatacatgtttgagt
catgtaggatctgttgttcaagtggaatggagccccagtcatgaaactatttttgctacc
tctgctactgacaaaaggctgataatttgggaccttaaccggattggggatgaacagact
gccgacgaagccgtctttgggccgccagaggcgttctttgttcacgccggtcacactgca
aagatctcagaattctcatggaaccccgaggagccttgggtcattgctagtgtggccgac
gacaatattcttcaggtatggcagatggctgagagataccgagatgacggcagcaatgat
catcgttga
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integrated database retrieval system
