Zingiber officinale (ginger): 122009492
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Entry
122009492 CDS
T08725
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT5-like
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122009492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122009492
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122009492
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
122009492
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_2
DUF7567
PHD_2
FAIM1
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
122009492
NCBI-ProteinID:
XP_042421607
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Position
8A:71642277..71648426
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AA seq
323 aa
AA seq
DB search
MEADSIACISLSDGTAVDDEVTVPLSKPQGGRIGTVDGGGVVPATTMSPASSVHELLECP
VCTNSMYPPIHQCQNGHTICSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLVLPCKYF
SAGCPEVFRYYSKLKHETVCNFRPYNCPYAGSECSVVGEIPFLVAHLRDYHKVDMHTGCT
FNHRYVKANAREVENATWMLTVFHCFGQYFCLHFEAFQLGVAPVYMAFVRFMGNEHEAKQ
FRYSLEVGSNGRKLIWEGIPRSIRDSHQKVRDSHDGLIIQRNMALFFSGGDRKELKLRVT
GRIWKDQQNPGGGAGMSTTPPYL
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggaagccgacagcatcgcgtgcatctcgctgtcggatgggacggcggtggacgacgag
gtcaccgtccccttgtcgaagccgcaaggcggcaggatcgggactgttgacggcggcgga
gtcgttccggcgacgacgatgagtccggcgagcagcgtgcacgagttgctcgagtgcccc
gtctgcaccaactcgatgtaccctccgatccatcagtgtcaaaatggacacactatttgt
tcaacctgcaagacgagggtccataaccgatgccccacttgcagacaagaacttggggac
ataaggtgtttagctttagagaaggtggctgaatcacttgtgcttccttgcaagtacttt
tctgcaggatgtccagaagtcttccgatactacagcaaactcaaacacgaaacggtatgc
aacttcagaccgtacaactgcccttatgctggttctgaatgttctgtggtcggggagatt
cctttcctggttgcacacttgagggattaccacaaggtggatatgcataccggctgcaca
ttcaaccatagatacgttaaggccaatgctcgagaggttgaaaatgctacctggatgctg
actgtgttccactgtttcggtcagtacttctgcctgcactttgaggcatttcagctcggc
gttgctccagtttacatggcgtttgtccgcttcatgggcaatgaacacgaagcgaagcaa
ttcagatacagccttgaggttggttcgaatggcaggaagctcatatgggaaggcattcct
cgtagcatccgcgacagccaccaaaaagttcgcgatagccacgatggtttaatcatccag
cggaacatggcacttttcttctcagggggagatcggaaggagttgaagctccgggttacc
ggccgcatatggaaggatcagcagaaccccggcggtggtgccggaatgtcgacgacacca
ccctatctctga
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