Zingiber officinale (ginger): 122009510
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Entry
122009510 CDS
T08725
Name
(RefSeq) transcription initiation factor TFIID subunit 12b-like isoform X1
KO
K03126
transcription initiation factor TFIID subunit 12
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122009510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122009510
03036 Chromosome and associated proteins [BR:
zof03036
]
122009510
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
122009510
Coactivators
SAGA/TFTC/STAGA complex
122009510
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
122009510
STAGA complex
122009510
TFTC complex
122009510
SAGA complex
122009510
SLIK complex
122009510
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIID_20kDa
CBFD_NFYB_HMF
Histone
Motif
Other DBs
NCBI-GeneID:
122009510
NCBI-ProteinID:
XP_042421626
LinkDB
All DBs
Position
8A:72476974..72488458
Genome browser
AA seq
616 aa
AA seq
DB search
MAENPASASPNKVPAGGGDGTIAPANSNPNLPSPQIPPSPSMAVGDLSQISSPQLSQSHA
LSPAAALDYASKQQSVQSQQQQPLPSSQQLQSQPQMQGQQQQQKQQAQQQQNMMSPSSYQ
MQQNLQRSGSMTRLSQLQQQLGASAAAGAMRQHAGMYGGQVNFGGAQIQQQQQQMAAAAA
AAAGGMGRSGIITQAAQLPMLPTQTTQHFNLQSQMLTQPRQKGLVQAGQFNPGNSSAQAL
QGMQNMGIISNLSMNPQLRAYNQRLVQGQIRQQQLQQQMTLTSPQQKLPGQSLPRAPSAA
ALNSQVSGLTQNGQSTIVQTTLSQQQQWLKHLQPSLPSPVSPSYHLQQQQRQQQSFLPQQ
LASSQLHQKSMALTPQQISQLMQQQPQPQLGGQQQQQHLLQMQQLQQIQQLQQQQQLQSP
KLSGSAVQKPLSLTGSQEEAPASGMTGGSSSQGTEATNQLLGKRKIHDLVMQVDPHGKLD
PEVEDLLLQIADDFIDSVTTFACSLAKHRKSSTLDTKDVLLHLEKNWNLTVPGYSREDRK
YLKTPLSSDIHKRRLIAIQESAETHQLEGDAGGSKATNKQLVNNSGSDHPINPSPSSEQL
SLPVVASQTTHKPQRF
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaaccccgcgtccgcctcccccaacaaggtcccagctggcggcggagatggc
acaatagccccggccaactccaaccctaacctcccgtccccgcaaattcccccttctccg
tccatggccgtcggtgacctttcccagatcagctcccctcaattgtctcaatcccatgct
cttagccctgccgctgcgctcgactacgcctcgaagcagcagagcgttcaatcccagcag
caacagcccttgccgtcgtcgcagcaactccaatctcagccgcagatgcagggccagcag
cagcagcagaagcagcaggcgcagcagcagcaaaatatgatgtcgccgtcgagctaccag
atgcagcagaacctccagcgatccgggtcgatgacgcggctgagccagctccagcagcag
ctcggcgcttctgcggctgctggcgcgatgcggcagcatgcggggatgtatggtgggcag
gtgaattttgggggcgctcagatccagcagcagcagcagcagatggctgctgccgctgcc
gctgctgctggagggatgggtcgatcagggattattacacaagcggcccagcttccgatg
ctacctacacagactactcagcatttcaatctgcagtctcagatgcttactcagccaagg
cagaaaggcttagttcaagctggtcagttcaatccaggaaattcttctgcccaggccttg
caaggaatgcagaatatgggtattatcagtaaccttagcatgaatccacaactaagagca
tataatcaacgtcttgtgcaagggcagataagacagcaacaattacaacagcaaatgaca
cttacatcacctcagcagaagcttcctggtcaaagcttacctagggcaccttcggctgct
gcactgaactcccaggtttctggtttgacacaaaatgggcaatcaacaatagtacaaaca
actctttctcaacagcagcagtggctgaaacatctacaaccttcgttgccttcaccagtt
tctccttcatatcatcttcagcaacagcaaaggcagcagcaatccttcttgccacaacaa
ctagcttcatcacagctccaccagaaatccatggccctgacgccacagcagatctctcaa
ctgatgcagcagcagccacagccacaattaggtggtcagcaacagcaacagcatttgctg
cagatgcagcagcttcaacaaattcaacagttacagcaacaacagcaattgcaatctcca
aaactttctgggtctgcagtccagaaacctttatctttgactggatcccaagaagaggcg
cctgcttctggcatgacaggtggaagttctagtcaaggaacagaagcaaccaatcaactt
cttggaaaacgaaagatacatgatttagttatgcaggtagatccccatggtaaactggat
cctgaagttgaagaccttctcttgcagatagctgatgacttcattgattcggttaccaca
tttgcttgcagtctagcaaagcatcgcaaatcttccaccttggacactaaggatgtactg
ctacacctagagaaaaactggaacttgactgttccaggttattcaagggaggataggaaa
tatctgaaaacaccattatcatcggatatccacaagaggcgactgatcgcgatacaagag
tcagcagaaacacatcagttggaaggagatgcgggaggttctaaagccacaaataaacag
ctcgtaaacaattctgggagcgatcacccaataaatccttcaccgagctcggagcagtta
tccctacctgtggttgcctcacaaaccacgcacaaaccgcagagattttag
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