Zingiber officinale (ginger): 122010015
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Entry
122010015 CDS
T08725
Name
(RefSeq) protein CHROMATIN REMODELING 20-like isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zof03000
]
122010015
03036 Chromosome and associated proteins [BR:
zof03036
]
122010015
Transcription factors [BR:
zof03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
122010015
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
122010015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
ADD_ATRX
Motif
Other DBs
NCBI-GeneID:
122010015
NCBI-ProteinID:
XP_042422292
LinkDB
All DBs
Position
8A:115336630..115419038
Genome browser
AA seq
1525 aa
AA seq
DB search
MDDLIEKETELRKVEVIIIEENDPEDIINEHEEKAKDDNIHQGEKGKGGLDAVKHGKDDN
SIESKVHIEPEADVIAEDYSDEDDENVSFEMLLDGSDNEITSASDNDCEPKSEAPLTDAE
IEELIAEFLEVESKAAEAQESLEHESLANVESEVRAELAENLHGDELELAVSKEMKVLVE
MWTDTLDNLETQSAILLEQLDGAGIELPSLYKYIESQVPDCCRTEAWRKRAHWVGTQAPA
ELNQSIRDAEHYLQSHQPVRRKHGRVYEIGSGGYLAKNLSVKDSDNFREYSEQDWHTFDE
IIHSNQWSDINSLSNNWAAVYLASTPQQAANLGLNLPGVNEVEEIGEIEGNPLYAEAIQN
EKEIGFSEEQKRNYRKVREEDDMKVSKKLQLRLKQKRKRKEHIQNDILDGTANTGEFQSD
FIDQISPCPFAGHTTNTAQDLKLENSMDEKLILHGIIKKRLLESVDADGHDSKRCRAVVI
ESDDEVINVVKDKVAVQDLPMHLSPSERVREVDVIDVDVLCSPTSANYCSGSNVPLTFHC
TACSEVLKASEVQGHPLIEVIICGNCKLLVEDKMKTKDPDDFCRWCGKPDDLIGCNSCKM
LFCAMCISRNFGETRLLEVKANGWDCCCCLPMLLEPFILEFKKAVKGFSVSSSESEFELP
DGEMDVRLGHKKRRKRRIRRIMDDAELGEETKRKIAMEKARQDHLKSMQASSFSKLSTIR
SSNESATEGIMTDATEGFIINVARETDEEPVRIPQSICAKLKPHQISGIRFMWENIIQSV
RKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTALRKADLGLRTALVVTPVNVLHNWRREF
AKWQPTELKPLRVFMLEDVARERRLDLLLKWRMKGGVFLVGYAAFRNLSLGRHAKDRNTA
SEISHALRLVPDILVCDEAHMIKNTKADITQALKSVKTQRRIALTGSPLQNNLMEYYCMV
DFVREGFLGSSQEFRNRFQNPIENGQHTNSTMNDVRTMNQRSHILYEQLKGFVQRVDMNV
VKKDLPAKTVFVITVKLSPLQRKLYKKFLEVHGFTRESISSEKMIRKRCFFAGYQALAQI
WNHPGLLQMAKEHKNFSRKEDAVENFLVEDSSSDDNMESVFMNGDKQRSKDDLPCKGNDN
IFVPQEIGWWEDLIDDKIYQEVDYSGKMVLLLDILTMSSEIGDKVLIFSQSLTTLDLIEM
YLSKLPRKGCEGKFWKQGKDWYRLDGSTQPSERQKLVEIFNEPSNRRVKCTLISTRAGSL
GINLHSANRVILVDGSWNPTYDLQAIYRVWRYGQNKPVYAYRLMAHGTMEEKIYKRQVTK
EGLAARVVDRQQVHRTMSKEEMLHLFDFGDDENVDVTEPADISLVNSDYERTNGIGCSRN
SLVNTDNLMDRLLRRHHPRWISNYHEHETLLQENEAERLTKEEQDMAWQIYQRSLEWEEV
SRAEIDDTRRVLNKNSLRENTVPQSVPQLAKSSSRSRLTNQRKCTNLAHLLTLRCQGIKS
GSSTICKECSQEISWENLNRDGRSR
NT seq
4578 nt
NT seq
+upstream
nt +downstream
nt
atggatgaccttatagaaaaagaaacagaactgaggaaagtggaagtaataataatagaa
gaaaatgatccagaagacataatcaatgaacatgaggaaaaggcaaaagatgacaatatt
catcaaggagagaaaggaaagggaggtcttgatgctgtgaaacatggaaaagatgataat
agcattgagtcaaaagttcatattgaaccagaggcagatgtgattgctgaggactacagt
gatgaggatgatgaaaatgtctcctttgaaatgcttcttgatggctcagataatgagata
acatcagcctctgacaatgattgtgaaccaaaatctgaggcacctttaactgatgctgaa
attgaagaacttattgcagagtttcttgaagttgagagtaaggctgcagaagcacaagaa
tcacttgaacatgagtcactagctaatgtggaaagtgaagtaagagctgagctagctgaa
aatctccatggagatgagttagaattggctgtatcaaaggaaatgaaagtacttgtagaa
atgtggacagatactcttgacaatttagagactcaaagtgctatattgttggaacaactt
gatggagcaggaattgagcttccaagtctttacaaatatatagagagtcaagttccagat
tgctgtagaactgaagcttggaggaaacgagctcactgggtcggtactcaggcacctgct
gaacttaaccaatcaattagagatgctgaacattatctacaatcccatcaacctgtaagg
aggaaacatggccgcgtctatgagataggctctggtggctatttagccaaaaatctttct
gtcaaggacagtgacaacttcagggaatattctgagcaagattggcatacatttgatgag
attattcattctaatcagtggtcagacattaactcacttagcaataattgggcagctgtt
tacctggctagtactcctcaacaagctgcaaatttaggacttaatttgcctggagttaat
gaggtagaggagattggtgaaattgaaggtaatccattgtacgctgaagcaatccaaaat
gaaaaggagatcggattttcggaagaacaaaagagaaactacagaaaggttagagaagaa
gatgacatgaaagtatcaaagaaacttcaacttcgtctgaaacaaaaaagaaaaagaaaa
gaacacattcagaatgacatattggatggcactgcaaacacaggtgagtttcagtcagat
ttcattgatcaaatttccccctgtccatttgctggccataccacaaatactgctcaagat
ttgaagcttgaaaattctatggatgaaaagctgattctgcatggtataatcaagaagagg
ttactcgaaagtgtggatgcagatggacatgacagtaaaaggtgtagggcagttgtcata
gagagtgacgacgaagtaataaatgtcgtcaaagacaaggttgcggtgcaagatttgccg
atgcatctgagtccatctgaaagagttagagaagttgatgtgatagatgttgatgttctt
tgttcaccaacttcagctaattattgtagtggttcaaatgttcccctgacattccattgt
acagcttgttctgaagtacttaaagcctctgaagtgcaaggacatccattgattgaagta
attatttgtgggaattgtaagcttctggtagaagataaaatgaaaacaaaggaccctgat
gatttctgtagatggtgtggtaagcctgatgatctcatagggtgtaattcttgtaagatg
ctgttttgtgctatgtgtatatcaaggaattttggtgaaacacgattattggaagttaaa
gcaaatggttgggattgctgttgctgtttaccgatgctgttggaaccgtttatcttggaa
tttaagaaagctgtaaaaggattctcagtttctagctctgaaagtgagtttgagcttcca
gatggtgaaatggatgtcagactaggtcacaagaaaagaagaaaaaggaggattaggaga
attatggatgatgcagaacttggagaagaaacgaagagaaaaattgcaatggagaaggct
aggcaagatcatttgaaatcaatgcaggcatcatctttcagtaaattaagtactattaga
agtagtaatgaaagtgcaacagaaggcattatgactgatgcaactgagggtttcattatt
aatgttgctagagaaactgatgaggagcctgtgagaattccacaaagcatttgtgcaaag
ttgaagccccatcagatttcaggaatacgatttatgtgggaaaacattatacaatctgtc
agaaaggtcaaatctggggataaaggactaggatgtattttagcccacacaatgggcctg
gggaaaactttccaggtcattgcattcctgtacactgctttgagaaaagctgatttaggt
ttaagaacagcacttgtagttacgcctgttaatgtgcttcataactggcgccgagaattt
gcaaagtggcaaccaacagagttaaagccccttcgtgtgttcatgttggaagatgttgcc
agggagagaagattagatttgcttttaaaatggagaatgaaaggcggagtatttctggtt
ggctatgctgcttttcggaacttgtctcttggaaggcatgcgaaggataggaatacagcc
agtgaaatttcacatgccttgcgtcttgtgcctgacattctagtttgtgatgaggctcat
atgatcaaaaatactaaggctgacataacacaagcgttaaaaagtgtaaagacacaaaga
agaattgccttaacagggtcacccttgcaaaacaatctgatggagtattattgtatggtt
gattttgtgagggaagggttccttggcagtagtcaggaattcagaaatcggttccagaat
cccatagaaaatggtcagcacacaaattctactatgaatgatgtcagaactatgaatcaa
agatcacacattctgtatgaacaactgaaaggttttgtccagcgagtggatatgaatgta
gtgaaaaaggatctccctgctaaaacagtttttgttataactgtaaaactttctcctttg
caaagaaagctatataaaaagttcttagaagttcatggtttcaccagagagagtatttct
tctgaaaagatgattaggaaacgctgtttctttgctggttatcaggcattagcacagata
tggaatcatcctggtctgttgcaaatggctaaagaacataagaatttctcaaggaaagaa
gatgctgttgagaacttcttggtggaagacagttccagtgatgataatatggaaagtgtc
ttcatgaatggagacaagcaaaggtcaaaggacgacttaccgtgcaagggaaatgataac
atttttgttccgcaggaaattggttggtgggaagatcttatagatgataaaatttaccaa
gaagttgattacagcggaaaaatggttttgctattagatatccttacaatgagttctgaa
ataggtgacaaggttctaattttcagccaaagtttgactactctagatttgatagaaatg
tatctgtcaaaattaccacgcaaggggtgcgaagggaagttttggaagcaaggcaaggat
tggtataggcttgatggtagcacacagccttctgaaaggcagaagctggtggagatattc
aatgaaccgtccaataggcgagtgaaatgcacattgatatccacacgtgctggatcatta
ggcatcaatcttcattctgctaaccgtgtgatccttgttgatggttcatggaatccaaca
tacgacctacaagcaatatatcgagtttggagatatgggcaaaacaagcctgtctatgcc
taccgcttgatggcacacggaaccatggaagaaaagatatacaagagacaggtcactaaa
gaaggacttgcagctagggtagtagatagacaacaagtacatagaacaatgtcaaaagag
gagatgcttcatctttttgactttggcgatgatgaaaatgtagatgtgactgagccagca
gatattagtctagtaaattcagattatgaaagaaccaatggaattggatgttcgaggaac
tctcttgttaatactgacaacctcatggacagattacttagaagacatcatccacgatgg
atctcgaattaccatgagcatgagacacttcttcaagagaacgaggctgagagattaact
aaagaggagcaagatatggcttggcagatttatcagagatcactggagtgggaggaagtt
agtagagccgagatcgatgatactcggagagttctcaacaagaattctcttcgtgaaaat
actgtgccccagtcagttccacaactagccaagagcagttcaaggagtcggctcacaaac
caaaggaaatgcaccaatctggcccacttgctaaccttaaggtgccagggcataaagtct
ggatccagcacaatatgtaaagaatgctcacaggagattagctgggagaacctgaataga
gatgggaggtctaggtaa
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integrated database retrieval system
