Zingiber officinale (ginger): 122010046
Help
Entry
122010046 CDS
T08725
Name
(RefSeq) ISWI chromatin-remodeling complex ATPase CHR11-like
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122010046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122010046
03036 Chromosome and associated proteins [BR:
zof03036
]
122010046
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
122010046
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
122010046
RSF complex
122010046
WICH complex
122010046
B-WICH complex
122010046
NORC complex
122010046
BRF complex
122010046
NuRF complex (fruit fly)
122010046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
Helicase_C
ResIII
HAND
Myb_DNA-binding
HDA2-3
DEAD
DBINO
Ribosomal_L27A
AAA_14
ToxN_toxin
Motif
Other DBs
NCBI-GeneID:
122010046
NCBI-ProteinID:
XP_042422350
LinkDB
All DBs
Position
8A:117730271..117740629
Genome browser
AA seq
1075 aa
AA seq
DB search
MAKPYDSGSSSEGTPSNGSIASEEEARNGAEANIEEEIDEEELEAVARTAGPDDDEAKDD
SGEEDAREDEDDGDEDGEEENSEIGKRERARLREMQRKKKQKIQEMLNTQNAAIDADMNN
KGKGRLKYLLQQTEIFAHFAKGAQSASEKKPRGRGRHASKITEEEEDEEYLKEEEDALSG
AGGTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLH
EFRGITGPHMVVAPKSTLGNWMREIRRFCPVLSPVKFLGDPEERRHIRENLLVAGKFDVC
VTSFEMAIKEKNALRRFSWRYVIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNN
LHELWALLNFLLPEIFSSSETFDEWFQISGDNDQQEVVQQLHKVLRPFLLRRLKSDVEKG
LPPKKETILKVGMSQMQKHYYRALLQKDLEVINAGGERKRLLNIAMQLRKCCNHPYLFQG
AEPGPPYTTGEHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLLYRGYQ
YCRIDGNTGGEERDASIETFNQPGSQKFIFLLSTRAGGLGINLATADVVILYDSDWNPQV
DLQAQDRAHRIGQKKEVQVFRFCTEFAIEEKVIERAYKKLALDALVIQQGRLAEQKTVNK
DELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDVKMKKFTEDAIKFKMDDT
ADLYDFDDEKDDNKVDFKKIVADNWVEPSRRERKRNYSDADYFKQAMRQGAPTKSKEPRI
PRMPQLHDFQFFNTQRLSELYEKEVRYLMQSHQKNQLKDTIADEEEPEDLGDPLTAEEQA
EKDQLLEEGFSSWTRKDFNAFTRACEKYGRNDIKSIASEMEGKTEEEVERYADVFRQRYK
ELNDYDRIIKIIERGEARISRKEEIMRAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECD
RFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEF
DERERQARKDKKLSRTPTKRSSSKGPTMETPALTSFKKRKQSSMDDYMSSGRRRR
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaccctacgattccggcagttcctccgagggaaccccatcgaacggctcgatc
gcctccgaggaggaggccaggaatggagcggaagccaacatcgaggaggagatcgacgag
gaggaactcgaggctgtcgccagaacggctggccccgacgacgacgaggctaaggatgac
agcggcgaggaggacgccagggaagacgaggacgatggcgatgaggatggagaggaggaa
aattctgaaattgggaagcgtgaaagagccagattaagagagatgcaacggaagaaaaag
cagaagattcaagaaatgcttaatacacaaaatgctgctattgatgctgacatgaacaac
aagggaaaaggacgtttgaagtacttgctgcaacagactgagatctttgctcattttgca
aagggtgcccaatctgcatcagaaaagaagccaagaggaagggggcgtcatgcatctaaa
ataacagaggaagaagaagatgaagagtaccttaaggaggaagaggatgctctttcaggt
gccggagggacccgtttggtcacacaaccatcttgtatacaaggaaaaatgagagattat
cagcttgctggattgaattggctaataagattgtatgaaaatgggattaatggaattcta
gctgatgaaatgggtcttggaaagacattgcaaaccatctctttacttggctatttgcat
gaatttagaggaattaccggtcctcacatggtggtagcaccaaaatctactctcggcaac
tggatgagggagattcggcgattctgtcctgttctgtcccctgtaaaatttcttggggat
cctgaagaaagaagacatattcgtgaaaatttgttggtggctgggaagtttgatgtgtgc
gtaactagttttgaaatggctatcaaagaaaagaatgctttaagacggtttagttggcgc
tatgtgatcattgatgaagctcatcggataaagaatgaaaattcccttctttctaaaaca
atgagactttataatactaattaccgccttcttatcactggaacaccacttcagaacaat
ctgcatgagctttgggctcttcttaattttctgcttcctgagatatttagttcttctgaa
acttttgatgaatggttccaaatatctggagacaatgatcaacaagaggttgttcaacaa
cttcacaaggttcttcgcccatttcttctgagaagattaaaatccgatgttgaaaagggt
ttgccaccaaaaaaggaaactatactcaaggtaggaatgtcacaaatgcaaaagcattat
taccgggctttgctacaaaaggatttggaggtcattaatgctggaggggagcgcaagcgt
cttttgaacatcgctatgcaattgcgaaaatgttgcaatcatccatatctattccaaggt
gcagaacctggaccaccttatacaactggagaacatcttattacaaatgcaggaaaaatg
gtcctgttagataaactgttgcctaaactgaaggaacgagattctagagttctaatattt
tcacagatgactagacttctggacatactggaagattacttgctatatcgtggttaccaa
tattgccggattgatgggaatactgggggagaagaacgggatgcttcaattgaaacattt
aatcaacctggaagccaaaagttcattttcttgctttctacaagagctggtggattggga
attaatcttgctactgcagatgttgtcattctctatgatagtgactggaatccacaagtt
gatttgcaagcacaggatcgtgctcatagaattgggcaaaagaaagaagttcaagtgttc
cgtttctgtactgagtttgcaattgaggagaaagtgatagagagagcatacaagaagctt
gcacttgatgccttggttattcaacaaggacgattagcagaacagaaaactgttaataaa
gatgaacttctacaaatggttagatttggtgctgaaatggtttttagctccaaggacagt
acaataactgatgaggatatcgatcgtatcatagctaaaggagaagaagcgactgctgaa
cttgatgtgaaaatgaaaaagtttacagaggatgcgataaagtttaagatggatgacact
gctgacttgtatgattttgatgatgagaaggatgataacaaggttgatttcaaaaaaata
gttgctgataactgggttgagccatccaggagggaaagaaaacgaaattattctgatgct
gattatttcaagcaagcaatgcggcaaggtgctcctacaaaatctaaagagccacgcatt
ccccgtatgcctcaattgcacgattttcagtttttcaacactcagaggttgagtgagttg
tatgagaaagaagttcgatatctcatgcaatctcatcaaaagaatcagttaaaagataca
atagccgatgaagaggaacctgaagatttaggagatccattgactgcagaggaacaagca
gagaaggaccaactgcttgaagagggcttttcatcttggacaaggaaagacttcaatgct
ttcactcgagcatgcgagaagtatggccggaatgatataaagagtatagcatcagaaatg
gaggggaaaacagaagaagaggtggaaagatatgccgatgtctttagacagagatacaaa
gaattaaatgactatgatcgcattattaagatcattgagagaggtgaggcaagaatctca
cgaaaggaagagataatgagagcaattggcaagaagttggatcgttataagaacccttgg
ttggagctgaagattcagtatggccaaaataaaggaaaactgtataatgaagaatgtgat
cgtttcatgttgtgcatggtacacaaacttggttatggcaactgggacgagctcaaggca
gcattccgtacctcacccttgtttcggttcgattggtttgtcaagtctcgaacgactcag
gaacttgccagacgctgtgatacccttatacgtctagtggagaaagaaaaccaagaattc
gatgagcgggaaagacaagcacggaaagataaaaagctctctaggacaccaacaaagcgg
tcgtcatcaaagggcccgactatggagactcctgctctgacttccttcaaaaagagaaaa
caatcatccatggatgactacatgagctcggggaggcggcggcgatga
DBGET
integrated database retrieval system
