Zingiber officinale (ginger): 122010139
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Entry
122010139 CDS
T08725
Name
(RefSeq) serine/threonine protein phosphatase 2A regulatory subunit B''beta-like
KO
K11583
serine/threonine-protein phosphatase 2A regulatory subunit B''
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122010139
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zof01009
]
122010139
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122010139
03036 Chromosome and associated proteins [BR:
zof03036
]
122010139
Protein phosphatases and associated proteins [BR:
zof01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
122010139
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
122010139
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
122010139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF-hand_13
EF-hand_7
EF-hand_6
EF-hand_1
EF-hand_8
EF-hand_5
P2R3B_EF-hand
DUF4187
Motif
Other DBs
NCBI-GeneID:
122010139
NCBI-ProteinID:
XP_042422502
LinkDB
All DBs
Position
8A:125424704..125443652
Genome browser
AA seq
541 aa
AA seq
DB search
MDIDIVRDMASLDPELLQLPEVSQVALKEKPKIAEELFCQWLSLTETGKLVKSLIEDAKG
SSPLNVPGSSSSSNSIGSNSPPSMFPAGSVPPLSPRSTSGSPRFLKRNPSVGPSPFGSPL
KLVSEPVREVIPQFYFQNGRPPPKALKEQCLSRIDHLFFGNLDGLQLQEFKTVTKEICKL
PSFLSTSLFRKFDVECTGMVTRDAFIEYWISSNLMTKDVATQIFTILKQADHNYLTQDDF
KPVLRELLASHPGLEFLQGTPEFQDRYAETVIYRIFYYMNRSGDGQLTLRELKRGNLIAA
MQHADEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNRALTYRIVER
IFSQVPRKFKSKVDGKMCYEDFVYFILAEEDKSSEPSLEYWFKCIDFDGNGIITSNEMQF
FYEEQLHRMECMAQEPVLFEDILCQMIDMIGPENESYFTLQDLKGSKLSGNVFNILFNLN
KFMAFETRDPFLIRQERENPSLTEWDRFAHREYIRLSMEEDCEDVSNGSGDIWDESLEAP
F
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggatatcgatattgtgagggatatggcgtcgcttgacccggagctgctgcagctcccg
gaggtatctcaagtggctctgaaggaaaaacctaagatagccgaggaactgttctgtcag
tggctttcattaaccgaaacaggaaaattggtaaagtcattgattgaagatgcaaaaggg
agttctccacttaacgttccaggcagttcaagcagttcaaattctataggaagcaattcc
ccaccttccatgtttcctgctggcagtgtgcctcctctctcacctaggagcacatctggg
tctccccgttttttgaagcgtaacccaagtgtcggaccttcaccctttggttctccacta
aaattagtcagtgaacctgtcagagaagttatacctcagttttacttccaaaatggtcgc
ccacctccaaaagcattgaaagaacaatgcttatctagaattgatcatcttttctttggc
aatttggatgggctacaattacaagaattcaaaacagtgacaaaggaaatatgtaagcta
ccatcatttctctccacttcccttttcagaaaatttgatgttgaatgcactggaatggtg
acaagggatgcatttattgaatactggattagtagcaacttgatgacaaaagatgtggct
actcagatctttactattctgaagcaagcagaccacaattaccttactcaggatgatttt
aaacctgtcctgcgagagcttttggcatcccatccaggtttggagttcctacaggggact
ccagaatttcaggatagatatgctgaaactgtcatatacagaattttctactatatgaat
agatctggcgatggccaacttaccctaagagaattgaaacggggaaatttaattgctgca
atgcagcatgctgatgaagaggaagatattaataaagttttgaggtacttttcgtatgag
cacttttatgtgatctactgcaagttttgggagcttgacacagatcatgatttcttgatt
gacaaagaaaaccttatcagatatggaaaccgtgcactgacttacagaattgttgaacgg
atcttctcacaggttcccaggaaattcaaaagcaaagttgatggtaaaatgtgctatgaa
gattttgtgtattttatactagcagaggaagacaagtcatctgagcctagcctcgagtac
tggttcaagtgtatagactttgatggtaatggaatcattacctcaaatgagatgcaattc
ttctatgaggaacagttgcaccgtatggaatgtatggcacaagaacctgtactctttgag
gacattctatgtcagatgattgatatgattggacctgagaatgagagctattttacactt
caagacttgaaaggcagcaaactttcaggaaatgtttttaatatccttttcaatctgaat
aagtttatggcatttgaaactcgtgatccatttctaattcggcaggaacgtgaaaatcca
tccttgacagagtgggataggtttgcacatagagaatatattaggttgtccatggaagaa
gattgtgaagatgtttcaaatggaagtggggacatttgggatgaatcacttgaggctcct
ttttaa
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