Zingiber officinale (ginger): 122010300
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Entry
122010300 CDS
T08725
Name
(RefSeq) histone acetyltransferase KAT6A-like
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
zof03015
mRNA surveillance pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122010300
09122 Translation
03013 Nucleocytoplasmic transport
122010300
03015 mRNA surveillance pathway
122010300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122010300
03041 Spliceosome [BR:
zof03041
]
122010300
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122010300
Spliceosome [BR:
zof03041
]
Complex C
Other components
EJC/TREX
122010300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
SAP_new25
DUF5335
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
122010300
NCBI-ProteinID:
XP_042422716
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All DBs
Position
8A:133129773..133136247
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AA seq
681 aa
AA seq
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MSSTYPVLNNKSIDQWKVTELKEELKRRKLPVRGLKEELVRRLADAMDAEIMDTEEEVND
EVKKDEPKVEDQSDSVQVQTENSDVDIAPMVNKVKDPDEQDDFSNATMVDKDSNSANIAK
AGICDGYTKVGKTECDAATEATSEVTNKDLKVEDARTVSSELDVSISETEANLVSLEDGA
TESHTATLQHDSDAVITRTEEKLDELVQDNSNLSLEEICPESHNQVSVVSLDLGSQVKCE
SIPIDSVSIIEKNKLKDNLNADDFHLEKEVVKQEMVQPSSNIVPSLGGDLQTVHDAKEQV
KHLVSLEDTQIKKTIFVDEGKKEDNLDEESPEKLNLDRSSSDELMEDDVLESKNIDSNIK
TEELVEKTEVTQELIVSDIKNIDVKQDVSIMEEIIDEDIKKPTVLTEKRKLEDQEAVAIN
EVPKRQRRWNSDAVKIPERQLSNLSTSSTPKNTFEITPRRTYIKSDLKPSGDSQKERIVP
PSQKSATTSLRIDRFLRPFTLKAVQELLAKTGSVCSFWMDHIKTHCYVTYSSVEEATATR
NAVYNLQWPSNGGNLLVAEFVDPQEVKARTEAPPQSPASITSNPNTPKAANFQQPQAAQP
FVRQHSLKLHQLPFPPQRQPDPQPVREQLPPPPPREPDPPALTLDDLFKKTKATPRIYYL
PLSEEEAASKLAARGKQSIKN
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctacatatcccgtgctcaacaataaatccatcgaccagtggaaggtcacagaa
ttgaaagaagagctgaagagaaggaaactcccagtaagaggtctgaaggaagaactggta
aggaggttagctgacgcaatggatgctgagatcatggacactgaagaagaggtgaatgat
gaagtcaaaaaagatgagcctaaggtggaagatcagagtgacagtgtgcaagttcagaca
gaaaattctgacgtagatattgcccctatggttaacaaagttaaagatccagatgaacaa
gatgacttctccaatgccactatggttgataaagattccaacagtgctaacattgctaaa
gctggcatttgtgatggttatacaaaagttggaaagactgaatgtgatgctgcaacagaa
gctacttcagaagtgaccaacaaagacttgaaagtggaagatgccagaacagtttcttca
gaattggacgtgtccatttcagaaacagaagctaacttggtctccctagaagatggtgca
actgagagccatactgctaccttgcagcatgattcggatgcagtcataacaagaactgaa
gaaaagctcgatgaactggtgcaagacaattcaaacctgtcccttgaggaaatctgccct
gaatcacacaatcaggtatcagtggtcagtctagacttaggatcccaggttaagtgtgag
tccattcctattgattctgtgtcaattattgaaaagaataaactaaaggataatttaaat
gctgatgactttcatctagaaaaagaggttgttaagcaggagatggttcaaccatcatcc
aacattgttccttcactaggtggcgatctgcagactgtgcatgatgccaaagagcaagtt
aagcacctggtttccctggaagatacacaaattaaaaagactatatttgttgatgaaggc
aagaaagaagataaccttgatgaagagtctccagaaaaattgaacttggataggagttca
agtgatgagttaatggaggatgatgtattggaaagtaagaacattgattccaatatcaag
accgaggaattagttgaaaaaactgaggtgacacaggagctcattgttagtgatataaaa
aacattgacgttaagcaggacgtgtcaattatggaggaaatcattgatgaagacatcaag
aagccaacagtccttactgaaaagagaaagttagaagaccaagaagctgttgcaatcaat
gaggttcccaagcgtcaacggcgttggaattcagatgctgttaaaattcctgaacgccaa
ttatctaacctcagtacatcaagtacacctaagaatacatttgaaattactcctaggcgc
acatatattaaatctgatttaaagccatctggagattctcaaaaggaacgaattgtacca
ccatcacagaaatctgcaactacttcgttaagaattgacagatttttgcgcccttttact
ctgaaagctgttcaagagctgcttgcaaaaactggatcagtttgcagtttctggatggac
cacattaagacccactgctatgtgacttattcttcagtggaggaagcaactgcaacacgc
aatgctgtttacaatctgcagtggccttcgaacggtggaaatcttttggtcgctgagttt
gttgacccccaagaagtcaaggcacgaactgaggccccaccacaatccccagcttccatt
acctcaaacccaaacactcccaaggctgcaaactttcagcaacctcaggctgctcaacct
tttgttcgccaacattctctgaaattgcaccagctgccgtttcccccacaaagacagcct
gatccgcagcctgtaagagagcaactccccccacctccgccgagggaaccagacccacct
gctctgacactcgacgatttgtttaagaagacaaaggcaacaccaaggatctattacctt
cccttgtctgaagaagaggcggcatcaaagcttgcagcacgtggtaaacaaagcatcaag
aactag
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