Zingiber officinale (ginger): 122010527
Help
Entry
122010527 CDS
T08725
Name
(RefSeq) exopolygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Module
zof_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122010527
Enzymes [BR:
zof01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
122010527
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Ribosomal_L18
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
122010527
NCBI-ProteinID:
XP_042422991
LinkDB
All DBs
Position
8A:13085458..13088107
Genome browser
AA seq
445 aa
AA seq
DB search
MASAMALKSFYVASVLLCLCKSSFEQAIFNPLDYEAEGDGKTDDSQALVDAWDSACEHHA
PAIFLIPAHTTFLSGPASFEGPCRVTPRVHIVGTLKAVESISAFHYPAWIEFKHLDDLHI
TGGGTLDGQGARSWPHACSSCKKLPMSLRLLKVSTMTLANLTFLNSKGFHISVQQSSFIN
ITHLNITAPGDSPNTDGIHISGTTDIKIADLHIGTGDDCISIGQGATNVNIANVRCGPGH
GISIGSLGKYQNEANVFGVHVRNCSLSETTNGVRIKTWPGSPPSQASNFTFQDIVMDNVA
NPIFIDQQYCPDSKCTGAPSQVKIRNVQFKRIRGTSNGPVAVKLLCSPSVPCENVFLEEI
SLTMANNAKSSTTLSSCSNVKGSAAGTQKPDPCVKKVPARGSENAREAVKDSGKAPPVPH
RQTKPYARSQGRKINKHRGGRNSKP
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcaatggcattgaaatcattttatgttgcttcggttcttttatgcttgtgt
aaatccagtttcgagcaagcaatctttaacccgttggattatgaggcagagggagatggc
aagaccgatgatagtcaggcgttagtggacgcatgggactcggcatgcgagcaccatgcg
ccggcgatcttcctcatcccggcgcacaccaccttcttgtccggcccggcatccttcgaa
ggcccctgccgcgtcactcccagagtccacatcgtcggcacgttgaaggccgtcgaatcc
atcagcgccttccactaccccgcctggatcgagttcaagcacctcgacgacctccacatc
accggcggcggcaccctcgatggccagggagctcgctcttggccccacgcctgctcgagc
tgcaaaaagctccccatgtcgttgaggttgctgaaggtgagcactatgaccctggccaac
ttgacgttcctcaacagcaaggggtttcatatcagcgtccagcagagctccttcatcaac
ataacacacctcaacataacagcccccggcgacagccccaacaccgacggcatccacata
agcggaaccaccgacatcaagatcgccgacctccacattggcacaggcgacgactgcata
tcaataggtcaaggcgccaccaacgtcaacatagcgaacgtcagatgcggccctggccat
ggaattagcattggaagtcttgggaagtaccagaacgaggcgaacgttttcggtgtgcac
gtgaggaactgctcgctttcggaaaccaccaacggagtcaggatcaagacttggcctggt
tccccacccagccaagcgtccaacttcacattccaggatatcgtcatggacaacgtcgcc
aaccccatcttcatcgatcaacaatactgtccagattctaaatgcactggagcaccatct
caggtgaagatccgtaacgtacagttcaaaagaataagagggacttcaaatggacctgtg
gcagtgaagctactttgcagcccgagcgtgccttgtgagaacgtgtttctggaggagatc
agcctgacgatggcaaacaatgccaagtctagtacgaccttgtcgtcttgctccaatgta
aagggttctgcagcggggactcagaagcctgatccctgtgtcaaaaaggtacctgcgagg
ggctccgagaatgctagagaggcagtcaaggactcaggcaaggcgcctccagttccacac
agacaaaccaagccttatgcccgttcccaaggaaggaaaatcaacaagcatagaggaggg
agaaatagtaagccataa
DBGET
integrated database retrieval system