Zingiber officinale (ginger): 122010876
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Entry
122010876 CDS
T08725
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122010876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122010876
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122010876
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122010876
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
122010876
NCBI-ProteinID:
XP_042423278
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Position
8A:60068333..60069223
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AA seq
296 aa
AA seq
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MAVAVVNNNDMLISSSAASTSASRVEVRSVWAHNLDEEFALIRSAVPFHPFVALDTEYPG
VVVASKNPYCTLTLPQRYELIRANVEALRIVQVGLTLSDAAGNLPCAIYSDGTCVRYVWE
FNFRDFDISRDRYAPSSVELLKANGIDFQKNQVWGIDSCRFAQHLATSGLLSFGHFSPVS
WVTFQGAYDFAFLVKMLTCDCKLPMTVREFLHLVHFFFGKRVFDVKHLCKHCPGLHGGLE
RVASTVRVERAVGSRHQSGSDSLLTWQVFYQIASRVNPQLIHRPEHMGTLFDLQLQ
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atggctgttgcagtcgtcaacaataacgatatgctaatttcctcttccgccgccagcacc
agcgccagcagagtcgaggttcgctccgtgtgggctcataacctcgacgaggagttcgcc
cttatccgctccgccgtcccgttccaccccttcgtcgcattggacaccgagtatcctggg
gtcgtcgtcgcttccaaaaatccctactgcaccctcaccctcccccagcgctacgaattg
atccgcgccaacgtcgaggccctccgcatcgtccaggtcggtctcaccctctccgacgcc
gccggcaacctcccatgtgccatctacagcgacggcacttgtgtgcgttacgtgtgggaa
tttaatttccgcgacttcgacatcagccgcgaccgttacgccccttcctccgtcgaactg
ctcaaggctaatggcatcgacttccaaaagaatcaagtatggggcatcgactcttgcaga
ttcgcccagcacttggccacctccggcttgctttcctttggccatttttctcccgtctcc
tgggttaccttccaaggcgcctatgacttcgccttcctagtgaagatgctgacatgcgac
tgcaaattaccaatgaccgttcgtgagttcttgcacctcgttcacttctttttcggcaaa
agggtgttcgatgtgaagcacctttgcaagcattgtcctgggcttcacggaggattggag
cgggtggcctctaccgtccgagttgagcgagcagtgggctctcgacatcagtccggctcc
gatagcttattaacatggcaggtgttctaccaaatcgcctctcgtgtgaatccacaactc
atccatcgtccagaacacatgggaaccctctttgacctccaactgcaatag
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