Zingiber officinale (ginger): 122010887
Help
Entry
122010887 CDS
T08725
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122010887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122010887
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122010887
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122010887
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
122010887
NCBI-ProteinID:
XP_042423289
LinkDB
All DBs
Position
8A:complement(<60438080..60445611)
Genome browser
AA seq
274 aa
AA seq
DB search
MAVAVVNNNDMLISSSAFSTSARVEVRSVWAHNLDEEFALIRSAVPFHPFVALDTEYPGV
VVASKNPYCTLTLSQRYELIRANVEALRIVQVGLTLSDAAGNLPCAIYSDGTCVRYVWEF
NFRDFDISRDRYAPSSVELLKANGIDFQKNQVWGIDSCRFAQHLATSGLLSFGHFSPVSW
ITFQGAYDFAFLVKMLTCDCKLPKTVHEFLHLVHFFFGKRVFDVKHLCKHCPGLYGGLER
VASTVRVERAVGSRHQSGSDSLLTCQVFYQIRRN
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atggctgttgcagtcgtcaacaataacgatatgctaatttcctcttccgccttcagcacc
agcgccagagtcgaggttcgctccgtgtgggctcataacctcgacgaggagttcgccctt
atccgctccgccgtcccgttccaccccttcgtcgcattggacaccgagtatcctggcgtc
gtcgtcgcttccaaaaatccctactgcaccctcaccctctcccagcgctacgaattgatc
cgcgccaacgtcgaggccctccgcatcgtccaggtcggtctcaccctctccgacgccgcc
ggcaacctcccatgtgccatctacagcgacggcacttgtgtgcgttacgtgtgggaattt
aatttccgcgacttcgacatcagccgcgaccgttacgccccttcctccgtcgagctgctc
aaggctaatggcatcgacttccaaaagaatcaagtatggggcatcgactcttgcagattc
gcccagcacttggccacctccggcttgctctcctttggccatttttctcccgtctcctgg
attaccttccaaggcgcctatgacttcgccttcctagtcaagatgctgacatgcgactgc
aagttaccaaagaccgttcatgagttcttgcaccttgttcacttctttttcggtaaaagg
gtgttcgatgtgaagcacctttgcaagcattgtcctggcctttacggaggattggagcgg
gtggcctctaccgtccgagttgagcgagcagtgggctctcgacatcagtccggctccgat
agcttattaacatgtcaggtgttctaccaaatcaggaggaat
DBGET
integrated database retrieval system
