Zingiber officinale (ginger): 122010902
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Entry
122010902 CDS
T08725
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122010902
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122010902
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122010902
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122010902
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
122010902
NCBI-ProteinID:
XP_042423303
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Position
8A:62003250..62004119
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AA seq
289 aa
AA seq
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MAVAVVNNNDMLISSSAASASASRVEVRSVWAHNLDEEFALIRSAVPFHPFVALDTEYPG
VVVASKNPYCTLTLPQRYELIRANVEALRIVQVGLTLSDAAGNLPCVIYSDGTCVSYVWE
FNFRDFDISRDRYAPSSVELLKANGIDFQKNQIWGIDSCRFAQNLATSGLLSFGHFSPVS
WVTFQGAYDFAFLVKMLTCDCKLPKTVREFLHLVHFFFGKRVFDVKHLYGGLERVASTVG
VERAVGSRHQSGSDSLLTWQVFYQIASRVNPQLIHRPEHMGTLFDLQLQ
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atggctgtcgcagtcgtcaacaataacgatatgctaatttcctcttccgccgccagcgcc
agcgccagcagagtcgaggttcgctccgtgtgggctcataacctcgacgaggagttcgcc
cttatccgctccgccgtcccgttccaccccttcgtcgcattggacaccgagtatcctggc
gtcgtcgtcgcttccaaaaatccctactgcaccctcaccctcccccagcgctacgaattg
atccgcgccaacgtcgaggccctccgcatcgtccaggtcggtctcaccctctccgacgcc
gccggcaacctcccatgtgtcatctacagcgacggcacttgtgtgagttacgtgtgggaa
tttaatttccgcgacttcgacatcagccgcgaccgttacgccccttcctccgtcgagctg
ctcaaggctaatggcatcgacttccaaaagaatcaaatatggggcatcgactcttgcaga
ttcgcccagaacttggccacctccggcttgctttcctttggccatttttctcccgtctcc
tgggttaccttccaaggcgcctatgacttcgccttcctagtcaagatgctgacatgcgac
tgcaaattaccaaagaccgttcgtgagttcttgcacctcgttcacttctttttcggcaaa
agggtgttcgatgtgaagcacctttacggaggattggagcgggtggcctctaccgtcgga
gttgagcgagcagtgggctctcgacatcagtccggctccgatagcttattaacatggcag
gtgttctaccaaatcgcctctcgtgtgaatccacaactcatccatcgtccagaacacatg
ggaacactctttgacctccaactgcaatag
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