Zingiber officinale (ginger): 122012138
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Entry
122012138 CDS
T08725
Name
(RefSeq) E3 ubiquitin-protein ligase RHF2A-like
KO
K19043
E3 ubiquitin-protein ligase RHF [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122012138
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122012138
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122012138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-rbx1
zf-C3HC4
zf-ANAPC11
zf-RING_UBOX
RING_XB3-XBAT31
zf-RING_5
SAP_new25
zf-Nse
Motif
Other DBs
NCBI-GeneID:
122012138
NCBI-ProteinID:
XP_042424521
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Position
8A:complement(6478436..6481162)
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AA seq
381 aa
AA seq
DB search
MDQTAKMESHLSSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTNCKHEFHLQCILEW
CQRSSQCPMCWQTIGLKDPTSQELLEGVERERSIRLNHARTAAIFHHPALGDFELQHLPV
GGSDAELEERIIQHLATAAARGRAHHIARRGWVRSESQGRPQYLVFSTNQNSPSVGFEPT
SPALGGENESPRAVVAVNPSISTTTPGRESTEVTSDFQAQVNQTPLSASRDSDNTNRPSI
STLRNLTGQYSFNQDRPGPSELQSLSETLKSRWNAVSMRYKESIARNTRGWRERLFSRNS
SVADIGSEVRREVSAGIANSSRMVEHLDTRESRTTNSTASPSAEVNAVAEPRNEGVSGSQ
ANTCVNSSASSTSCAATSGSN
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atggatcagactgcaaagatggaaagccacctgtcatcagccgcggcttttgtggaagga
ggcatccaggatgcttgtgatgatgcttgcagcatatgtctagaagctttttgcgacagt
gacccttccacggttactaattgcaagcacgagttccatctacagtgcattctcgaatgg
tgccagagaagctctcagtgtccaatgtgttggcagactattggtttgaaagatccaacc
agccaagagctattagagggcgtagagcgtgaaaggagcataagacttaaccatgcacgc
actgctgctatttttcatcatccggcacttggtgattttgagttgcaacatttgcctgtt
ggtggaagtgatgctgaacttgaagagcgtattatccagcacttagccactgctgctgcc
aggggaagagcacatcacattgctagaagaggatgggttagatcagaatctcaaggccgc
ccacaatatttggttttctctactaatcagaattcaccatcagtaggctttgaacctact
tcccctgccttaggaggggaaaatgaatcacctcgtgcagtagttgctgttaatccatca
atttcaactactactccgggaagggaatccaccgaagttaccagtgacttccaagctcaa
gttaaccagactccattgtcggcttcaagagacagcgataatacaaacagacctagtatt
tcaaccctcaggaatctaactggccagtattcgtttaatcaagacagaccaggaccctct
gagttgcaatctctatcagaaactctgaaatctcgctggaatgctgtctcaatgagatac
aaagaatctatagctaggaatacccgaggatggagggagcgactattttcacgtaatagt
tctgttgcagatattggttctgaagtcagaagagaagtcagtgctggaattgctaactcg
tcacgaatggtggaacacttggacacaagagaaagtagaaccacgaattcgactgcgtca
cccagtgctgaagtaaatgcagttgcggaaccaagaaatgagggtgttagtggcagtcaa
gctaacacctgtgtgaatagtagcgcttcatccacatcttgtgctgcaacttctggttcc
aactaa
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