Zingiber officinale (ginger): 122012338
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Entry
122012338 CDS
T08725
Name
(RefSeq) ubiquitin domain-containing protein DSK2b-like
KO
K04523
ubiquilin
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122012338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
122012338
03051 Proteasome [BR:
zof03051
]
122012338
Membrane trafficking [BR:
zof04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Selective cargos
122012338
Proteasome [BR:
zof03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
122012338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBQLN1
ubiquitin
UBA
Rad60-SLD
UBA_7
Dsc3_N
Rad60-SLD_2
Ubiquitin_2
Motif
Other DBs
NCBI-GeneID:
122012338
NCBI-ProteinID:
XP_042424772
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Position
8A:9728342..9732986
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AA seq
538 aa
AA seq
DB search
MATDGDPGVAADPGAVGEADSVTIHVRSSNGSKLSVQASLECTVGAFKVLLEEKSDVPAE
RQRLIYKGQILKDEKTLMSYGLESDHTIHLVHGLTLQNPPSDVTPAANRVSGVESGGSNG
GGGFGGADVASSLFPGIGSNIRNGAGSGMLGFGLPDLSQMQQQLVQNPSMMREMMNMPAV
QSLINNPDLMRNMIMNNPQMREIIDRNPEFAHILNDPNTLRQSLEVMRNPELMRELMRST
DRAMSNIESSPEGFNMLRRMYETVQEPFLNATAGAGNEGNDVGQNPFAALLGNQGGVQSR
DLTPDQPGTGSNQTNESSSPNSNPLPNPWSRTGAQTTNTTPAPPRDGRSPSIGGLSGLER
MAGGMTDPSFVNQLLQNPAIMQMTQSLLSDPQFMNQVLNPQLRNLLGSNSQLSSMLQNPE
LIQQLTSPETLQQLLSFQQTLISPGGQRQTSQEQNQTGATATGAINTSGLEFMMNMLSGL
GSGTGAPNPDVPPEERYATQLSQLQDMGFSDTQENIRALEATAGNVHAAVDWLLRSPH
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgacggcgatcctggtgtcgccgccgacccgggcgccgtcggcgaggctgat
tcagtcactatccatgtccgatcctccaacgggtccaaactctcggtgcaggcctcactc
gagtgcacggtaggggccttcaaggttctcctggaggagaagtccgatgtcccggcggag
cggcagcggttgatttacaaaggccagattttgaaggacgaaaaaaccctaatgagctat
ggcttggagtcagatcacacaattcatttggttcatggtttgaccctgcaaaatccacct
tccgatgtgactccagctgctaatagagtttcaggagttgagagtggtggttctaatgga
ggtgggggatttggaggagctgatgttgcaagctcgctctttcctggcattggtagtaac
attagaaatggtgctggatcaggcatgcttggatttggcttaccagatctcagtcagatg
cagcagcagttagtgcaaaatccaagcatgatgagggaaatgatgaatatgcctgctgtt
cagagtctgataaataatcctgacctgatgcgaaacatgataatgaacaatcctcaaatg
cgtgagatcattgaccgtaatcctgagttcgcgcacatcctaaacgaccccaacactctt
cggcaatctctggaagtcatgaggaatcctgaactcatgagagaattgatgcggagcact
gatagagctatgagcaacattgagtcatccccagaaggattcaacatgcttaggcgaatg
tatgaaactgtccaggagccgtttcttaatgctacagcaggggcaggaaacgaggggaat
gatgtgggtcaaaatccatttgcagcacttttggggaatcagggtggtgtgcagtcgaga
gatctgacaccagaccagcctggtactggttccaatcaaactaatgaatcatcttcacca
aatagtaacccacttccaaacccatggagcagaactggagcgcagacaaccaataccaca
ccagctcctcctcgtgatggaagatctccaagcattggtggattatcagggttagaaagg
atggctggtggaatgacagatccatcctttgtcaatcaacttctgcaaaaccctgccatt
atgcagatgacgcagagtctcctctccgaccctcagtttatgaatcaggttctgaatcca
caactccgtaacttgttgggttccaactctcagcttagcagtatgttgcagaatccagaa
ttgattcagcagcttacttctcctgagacactgcagcaacttctatcatttcagcagaca
cttatatccccaggtggccagcggcaaacaagccaggaacaaaatcagactggtgccact
gcaacaggagcgatcaataccagtggcttagaatttatgatgaatatgcttagtggactt
gggtctggcacgggggctcctaaccctgatgtgcctcctgaggaacgatatgcaacacag
ctttctcagctacaggatatgggcttctctgacactcaagaaaacattcgcgcattagaa
gccactgctggaaacgtccatgctgcagttgattggcttttgaggagccctcattga
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