Zingiber officinale (ginger): 122012358
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Entry
122012358 CDS
T08725
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122012358
Enzymes [BR:
zof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122012358
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
122012358
NCBI-ProteinID:
XP_042424811
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Position
8A:10003637..10007236
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AA seq
459 aa
AA seq
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MAGGSRSIAAPLLLLLLLGLIVLLGGGTVGRIRIGSERSSDSRSDHTSRRSLREATRNPR
EAAASIEERAKTKTAEAAVDYPDEVASTVIMSIRNNTARRSLAYLSCGTGNPIDDCWRCD
PDWHNNRKRLADCGIGFGRNAIGGRDGNFYVVTDSGDDDPVNPRPGTLRYAVIQDEPLWI
TFKQDMVITLKEELIMNSFKTIDGRGRNVHIANGACITIQYISNVIIHGLHIHDCKPTGN
AMVRSSPSHYGWRTMADGDAISIFGSSHVWVDHCSLSNCADGLVDAVMGSTAITVSNSYF
THHNEVMLLGHSDSYERDKSMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYA
IGGSANPTINSQGNRYLAPSNPFAKEVTKRVDTDESTWKDWNWRSEGDLLLNGAFFTPSG
AGASVSYSRASSLGARSSSLVGTLTSNAGVLACQEGTQC
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggcggggggttcaaggtcgattgcagctcctctgctgctgttgctgctcctagggctc
atagtgctattgggcgggggaacagtggggcggattcggattggaagcgagaggtcgtcg
gattcgaggagcgaccacacttctcggaggagcttgagggaggcgacacgcaatccgagg
gaggctgctgcttccatcgaagagagggctaaaaccaaaactgcagaagccgcagttgat
taccctgacgaggttgcttctactgtcatcatgtccataagaaacaacacagctcgcagg
tctcttgcttacctgtcatgtggcacaggcaacccaattgatgattgctggcggtgtgat
cctgactggcacaacaatcggaaaagacttgctgattgtgggattggctttggtcgaaat
gccattggtggccgggatggaaatttctatgtggtgaccgactctggcgatgatgatcct
gtgaatccacggccaggaacactcagatatgcagtcatccaggatgaacccctctggatc
acttttaagcaggacatggtgatcacactcaaggaggagcttatcatgaacagttttaag
acaattgatggacgtggtagaaatgtccacattgccaacggagcttgcattaccatccaa
tatatctccaatgtcatcatccatgggctccacatccatgactgcaaacccactggaaat
gctatggttcgcagttctccttcccattatggatggagaaccatggctgatggggatgca
atttccatctttggttctagccatgtctgggtggaccattgctctctgtccaactgtgcg
gatggacttgttgatgcggtaatgggctctactgctattacagtctccaacagttatttc
acccaccacaatgaggttatgcttttgggccacagtgattcttatgaaagggacaaatct
atgcaagttacaattgcatttaaccattttggcgagggactcattcagagaatgcccagg
tgcaggcatggttactttcatgtggttaacaacgattatacacactgggaaatgtatgcc
attggtgggagtgctaatccaaccatcaacagccagggcaaccgatatcttgccccttct
aatccatttgcaaaagaggtaaccaagagagtggacacagacgaaagcacatggaaggac
tggaattggaggtcagaaggtgacctgctgctaaatggtgcttttttcaccccctctggt
gcaggtgcttcagttagctactcaagagcgtccagtctcggagctaggtcttcttctctg
gttggcacattgacttctaatgctggagttcttgcgtgccaagaagggacccaatgctaa
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