KEGG   Zingiber officinale (ginger): 122012437
Entry
122012437         CDS       T08725                                 
Name
(RefSeq) THO complex subunit 6-like
  KO
K13175  THO complex subunit 6
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    122012437
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zof03019]
    122012437
   03041 Spliceosome [BR:zof03041]
    122012437
Messenger RNA biogenesis [BR:zof03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     122012437
Spliceosome [BR:zof03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    122012437
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WDR55 Beta-prop_TEP1_2nd Beta-prop_EML_2 EIF3I WD40_CDC20-Fz Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_SPT8 Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_IFT122_1st Hira NBCH_WD40
Other DBs
NCBI-GeneID: 122012437
NCBI-ProteinID: XP_042424912
LinkDB
Position
8A:11377454..11393193
AA seq 389 aa
MATEQEAAGGDARSWDEERYRKSILQERELRCRTVFRTAFAPSQNPNPDILVVASSDGSL
SCYSLASCIASMSQYQQLDMATNLRTAADPLSADPLSIIPAHKGPTYDLKFYTHGENCLL
FSCGDDGRLRGWNWKEILSSHIVVDKKTQGNLLKPILDLANPQHEGPWGALSPIPETNAI
TINEQEGSVYSAAGDARAYSWDIETGKQKMVFKGHADYLHCITARKSSHQIITGSEDGTT
RIWDCRSGLCTQVIQSGRNLKSKLSSWVSCVAIDSSESWLACGTGAGLSVWSLLSYECIF
NIGHYAPVQDLLFDDNQIVAVGSEPVLTRFSINGATLSQLKCAPQSAFSVSLHPSGVIAV
GGYGALVDVLSQFGSHLCTFYCRGLDNYS
NT seq 1170 nt   +upstreamnt  +downstreamnt
atggccacagaacaggaggcagcaggtggtgacgctaggtcttgggacgaagaaagatac
aggaagagcattctccaggagagggaactgcgatgtcgaactgtcttccgaactgccttc
gccccttcccagaaccctaaccctgatatcctcgtcgtggcttccagcgatggttccttg
tcgtgttactccttggcttcctgcatcgcctctatgtctcagtaccagcagttagatatg
gcgacaaatctgaggactgcggctgatccattgtcagcagacccacttagtatcattcca
gcacacaaaggccccacctatgatttgaagttctatactcacggagagaactgcttgctt
tttagttgtggtgacgatggccgactaaggggttggaattggaaggaaatactgagttca
catattgttgtggataaaaagacccagggtaatttgttgaagccaatacttgacttggca
aacccacaacatgagggtccttggggggctctatcgccaatacctgagactaatgccatc
acaatcaatgaacaggaaggctcagtttattcagctgctggtgatgctcgtgcatactca
tgggacattgaaacagggaaacagaaaatggtattcaagggtcatgcagattatttgcat
tgcattactgctcgtaaatctagtcatcagattatcacaggttcagaagatggaacaaca
cgaatatgggattgtagaagtggattatgcactcaagttatacaatctgggaggaacctt
aagtctaagctgtcttcttgggtcagttgcgttgccattgattcaagtgaaagttggctg
gcttgtggaactggtgctggattatcagtttggagtttgctatcctatgaatgtatcttt
aacataggccattatgctccagtgcaagatttgctgtttgatgataatcagattgttgca
gttggatcagaacctgtgcttactcgtttcagtattaatggggctactctttcacaatta
aaatgtgctcctcaatctgcattttctgtttcactgcatccttctggagttatagctgtt
ggtgggtatggagctctggtggatgttttatcacaatttggtagccatctgtgcacgttt
tattgtcggggcttggataactattcatga

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