Zingiber officinale (ginger): 122012521
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Entry
122012521 CDS
T08725
Name
(RefSeq) SKP1-like protein 1A
KO
K03094
S-phase kinase-associated protein 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03083
Polycomb repressive complex
zof04120
Ubiquitin mediated proteolysis
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122012521
04120 Ubiquitin mediated proteolysis
122012521
09126 Chromosome
03083 Polycomb repressive complex
122012521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
122012521
04121 Ubiquitin system [BR:
zof04121
]
122012521
03036 Chromosome and associated proteins [BR:
zof03036
]
122012521
Membrane trafficking [BR:
zof04131
]
Endosome - Lysosome transport
Acidification regulators
RAVE complex
122012521
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Adaptor protein
122012521
Cul7 complex
122012521
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
122012521
Centromeric chromatin formation proteins
Kinetochore proteins
CBF3 complex
122012521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Skp1_POZ
Skp1
TrbL_2
Motif
Other DBs
NCBI-GeneID:
122012521
NCBI-ProteinID:
XP_042425018
LinkDB
All DBs
Position
8A:12580838..12596897
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AA seq
288 aa
AA seq
DB search
MAKTITLRSSDGEVFEVDEAVAMVSPIIKHVIEDCPDNTIPLPNVTSKILPAVIEYCKKH
VDASSDGDSRLADEELKSWDAKFVKVNKATLFQLCLAADYLYIKGLLDLTYQTVADKMKG
MTLEEIRFKKVVTLRSSDGELFVVDEVVAMKSQTIKYLIEDDCADSAIPLPNVTSDILLQ
VIEYCEKHVDDDATTASNSSDDDSRLADEELKSWDAEFVKVDQATLFDLILAANYLNIKG
LLDLTCQTVVDMIKGKTPEEIRKTFNIKDDFTPEEEEEVRRENPWAFE
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagacgatcacgctgaggagctccgacggtgaggttttcgaggtagacgaggcg
gtcgccatggtatcgccaatcatcaagcacgtgatcgaggactgccccgacaacaccatc
cctcttccaaacgtcacctccaagatcctcccggcagtcatcgagtattgcaagaagcac
gtcgacgcgtcatctgatggcgactcacggctagctgacgaagaactcaaatcctgggat
gccaagtttgtcaaggtcaataaggcgaccctattccaactctgtctggctgcagattac
ctgtatataaaagggcttctggatttgacttaccaaactgtggccgataagatgaaggga
atgaccctcgaagaaatccgcttcaaaaaggttgttactctgaggagctccgacggtgag
ctattcgtggtcgacgaggtggttgccatgaaatcgcagaccatcaagtacttgatcgag
gacgactgcgccgacagcgccatccctcttccaaatgtcacctccgatatccttctccaa
gtcatcgagtattgcgagaagcacgtcgacgacgacgccaccactgcctcgaactcatct
gatgatgattcccggctcgctgacgaagaactcaagtcatgggatgccgagtttgtcaag
gtcgatcaggcgaccctattcgatctcatactggctgcaaactacctgaatataaaaggg
cttctggatttgacttgtcaaactgtggtcgatatgataaagggaaagaccccagaagaa
atccgcaaaacattcaacatcaaagatgactttactccagaagaagaggaagaggtccga
agggagaatccatgggccttcgaatga
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